Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13020
- Subject:
- NM_001352306.2
- Aligned Length:
- 2197
- Identities:
- 1064
- Gaps:
- 1130
Alignment
Query 1 ---------ATGTT-GCTTTTCGTGG---------------AGCAGGTAGCATCTAAAGGAACTGGTTTAAATC 49
||||| ||..||| .|| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGGGATGTTAGCAATTC-AGGCCTGTCCGACTCCCCAGCAGGTAGCATCTAAAGGAACTGGTTTAAATC 73
Query 50 CTAATGCCAAAGTATGGCAAGAAATTGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CTAATGCCAAAGTATGGCAAGAAATTGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGC 147
Query 124 TCTTGGCATGAAATAGCAGCTACATCAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 TCTTGGCATGAAATAGCAGCTACATCAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAA 221
Query 198 AGAATATGAAGTAATGTATTCTTCATCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATG 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGAATATGAAGTAATGTATTCTTCATCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATG 295
Query 272 GGATGATTTTAGGACCAGAAGATCTGAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCT 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GGATGATTTTAGGACCAGAAGATCTGAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCT 369
Query 346 ACAGAAGACCTAAAAGAATGTCTGAAGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACAGAAGACCTAAAAGAATGTCTGAAGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCT 443
Query 420 TTACTTGATATCTCAAATGGATAGTGATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TTACTTGATATCTCAAATGGATAGTGATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAA 517
Query 494 AGTTGACTACAGACCCTGATCTAATTCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGTTGACTACAGACCCTGATCTAATTCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGT 591
Query 568 GAGAAAGTGAGACCAAGTCATAAGCGTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GAGAAAGTGAGACCAAGTCATAAGCGTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGA 665
Query 642 AGTGAAAGGTTTGTTCAAAAGTGAAAACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGTGAAAGGTTTGTTCAAAAGTGAAAACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGT 739
Query 716 ATATCACTTTCCAGTCAGACACAGATGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAG 789
||||||||||||||||||||||||||||||||||
Sbjct 740 ATATCACTTTCCAGTCAGACACAGATGCACAACA---------------------------------------- 773
Query 790 GGCAAGCCAATTATGGCAAGGATAAAAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 --------------GGCAAGGATAAAAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTC 833
Query 864 TAGTATCTATAGTCACCCCATTCAAACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATC 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TAGTATCTATAGTCACCCCATTCAAACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATC 907
Query 938 CTCACCAACAGTACTCGGTCTATAGTATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CTCACCAACAGTACTCGGTCTATAGTATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACA 981
Query 1012 CCACTGGCTCCCTTTCCCAATGGTAGTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CCACTGGCTCCCTTTCCCAATGGTAGTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGC 1055
Query 1086 TGCTATGAATATGGGTCGACCATTCC-AAAAAATCGTG------------------------------------ 1122
|||||||||||||||||||||||||| |||||||||||
Sbjct 1056 TGCTATGAATATGGGTCGACCATTCCAAAAAAATCGTGTGAAGCCTCAGTTTAGGTCATCTGGTGGTTCAGAAC 1129
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1130 ACTCAACAGAGGGCTCTGTATCCTTGGGGGATGGACAGTTGAACAGATATAGTTCAAGAAACTTTCCAGCTGAA 1203
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1204 CGGCATAACCCCACAGTAACTGGGCATCAGGAGCAAACTTACCTTCAGAAGGAGACTTCCACTTTGCAGGTGGA 1277
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1278 ACAGAATGGGGACTATGGTAGGGGCAGGAGAACTCTCTTCAGAGGTCGAAGACGACGAGAAGATGACAGGATCT 1351
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1352 CAAGACCTCATCCTTCAACAGCTGAATCAAAGGCTCCAACACCAAAGTTTGACTTATTAGCCTCAAATTTTCCA 1425
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1426 CCTTTACCTGGAAGTTCATCAAGAATGCCAGGTGAACTCGTTTTGGAGAATAGGATGTCTGATGTTGTTAAAGG 1499
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1500 TGTCTACAAAGAAAAGGATAATGAAGAGTTGACAATTAGTTGCCCAGTGCCTGCAGATGAGCAGACAGAATGCA 1573
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1574 CTTCTGCCCAGCAACTCAATATGAGTACCAGTTCTCCATGTGCTGCTGAGCTTACTGCATTAAGCACAACTCAG 1647
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1648 CAAGAAAAGGATCTAATAGAAGATTCCTCTGTTCAGAAGGATGGTCTCAATCAGACAACTATACCAGTTTCTCC 1721
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1722 TCCAAGTACTACAAAGCCATCGAGGGCAAGTACTGCTTCACCATGTAATAATAACATAAATGCAGCTACAGCTG 1795
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1796 TGGCTCTACAGGAACCCCGAAAGTTAAGTTATGCTGAAGTGTGCCAGAAGCCCCCTAAAGAGCCATCTTCAGTT 1869
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1870 CTTGTGCAGCCACTACGGGAACTTCGCTCCAATGTGGTGTCTCCCACCAAAAATGAAGACAATGGAGCTCCTGA 1943
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1944 GAACTCCGTTGAGAAACCACATGAGAAGCCAGAAGCAAGGGCTAGTAAGGATTATTCTGGCTTCCGAGGCAATA 2017
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 2018 TAATCCCCAGGGGAGCAGCAGGAAAAATCAGGGAACAGAGACGCCAGTTTAGCCATAGGGCTATACCTCAGGGA 2091
Query 1123 --------------------------------------------------- 1122
Sbjct 2092 GTGACTCGACGTAATGGCAAAGAGCAATATGTGCCACCCAGATCACCAAAG 2142
