Construct: ORF ccsbBroadEn_13020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000677.1_s300c1, BRDN0000387217
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LARP4 (113251)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113251 LARP4 La ribonucleoprotein 4 NM_001352325.2 99.7% 99.4% 1112delA;1122_1122delGinsTG
2 human 113251 LARP4 La ribonucleoprotein 4 NM_001170804.1 84% 83.5% 1112delA;1124_1335del
3 human 113251 LARP4 La ribonucleoprotein 4 NM_001352326.2 80.7% 80.4% 802_803ins213;899delA;909_909delGinsTG
4 human 113251 LARP4 La ribonucleoprotein 4 NM_001352323.2 76.6% 76.3% 1112delA;1121_1122insT;1123_1461del
5 human 113251 LARP4 La ribonucleoprotein 4 XM_024448827.1 75.1% 74.3% (many diffs)
6 human 113251 LARP4 La ribonucleoprotein 4 NM_001352304.1 68.3% 67.8% 0_1ins210;902delA;914_1125del
7 human 113251 LARP4 La ribonucleoprotein 4 NM_001352324.1 68.3% 67.8% 0_1ins210;902delA;914_1125del
8 human 113251 LARP4 La ribonucleoprotein 4 NM_001352321.2 67% 66.6% 1112delA;1124_1674del
9 human 113251 LARP4 La ribonucleoprotein 4 XM_024448825.1 65.8% 65% (many diffs)
10 human 113251 LARP4 La ribonucleoprotein 4 NM_001170808.1 57.1% 56.9% 1112delA;1121_1122insT;1123_1959del
11 human 113251 LARP4 La ribonucleoprotein 4 XM_011537836.3 56.2% 55.6% (many diffs)
12 human 113251 LARP4 La ribonucleoprotein 4 XM_024448824.1 54.4% 54.1% 0_1ins210;902delA;914_1464del
13 human 113251 LARP4 La ribonucleoprotein 4 NM_001352322.2 54.3% 53.9% 802_803ins213;899delA;911_1461del
14 human 113251 LARP4 La ribonucleoprotein 4 XM_024448826.1 53.2% 52.4% (many diffs)
15 human 113251 LARP4 La ribonucleoprotein 4 NM_052879.5 51.6% 51.3% 1112delA;1124_2172del
16 human 113251 LARP4 La ribonucleoprotein 4 NM_199188.3 51.5% 51.2% 16_17insAGC;1109delA;1121_2169del
17 human 113251 LARP4 La ribonucleoprotein 4 NM_001330415.2 51.2% 50.9% 166_183del;1130delA;1142_2190del
18 human 113251 LARP4 La ribonucleoprotein 4 NM_001352305.2 51% 50.8% (many diffs)
19 human 113251 LARP4 La ribonucleoprotein 4 XM_011537829.3 50.8% 50.2% (many diffs)
20 human 113251 LARP4 La ribonucleoprotein 4 NM_001352307.2 49.1% 48.8% 749_750ins54;1058delA;1070_2118del
21 human 113251 LARP4 La ribonucleoprotein 4 NM_001352306.2 48.4% 47.8% (many diffs)
22 human 113251 LARP4 La ribonucleoprotein 4 NM_001352318.2 46.4% 46.2% (many diffs)
23 human 113251 LARP4 La ribonucleoprotein 4 XM_024448823.1 46.4% 46.2% (many diffs)
24 human 113251 LARP4 La ribonucleoprotein 4 NM_001170803.2 46.3% 46% (many diffs)
25 human 113251 LARP4 La ribonucleoprotein 4 XM_011537843.3 45.5% 44.9% (many diffs)
26 human 113251 LARP4 La ribonucleoprotein 4 NM_001352309.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
27 human 113251 LARP4 La ribonucleoprotein 4 NM_001352310.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
28 human 113251 LARP4 La ribonucleoprotein 4 NM_001352311.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
29 human 113251 LARP4 La ribonucleoprotein 4 NM_001352312.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
30 human 113251 LARP4 La ribonucleoprotein 4 NM_001352313.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
31 human 113251 LARP4 La ribonucleoprotein 4 NM_001352314.1 41.9% 41.7% 0_1ins210;902delA;914_1962del
32 human 113251 LARP4 La ribonucleoprotein 4 XM_011537838.3 41.9% 41.7% 0_1ins210;902delA;914_1962del
33 human 113251 LARP4 La ribonucleoprotein 4 XM_017018751.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
34 human 113251 LARP4 La ribonucleoprotein 4 XM_017018753.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
35 human 113251 LARP4 La ribonucleoprotein 4 XM_017018754.2 41.9% 41.7% 0_1ins210;902delA;914_1962del
36 human 113251 LARP4 La ribonucleoprotein 4 NM_199190.3 41.8% 41.5% 802_803ins213;899delA;911_1959del
37 human 113251 LARP4 La ribonucleoprotein 4 NM_001352315.2 41.7% 41.4% (many diffs)
38 human 113251 LARP4 La ribonucleoprotein 4 NM_001352308.2 41.5% 41.2% (many diffs)
39 human 113251 LARP4 La ribonucleoprotein 4 XM_011537835.3 41.1% 40.5% (many diffs)
40 human 113251 LARP4 La ribonucleoprotein 4 NM_001352320.2 33% 32.8% (many diffs)
41 human 113251 LARP4 La ribonucleoprotein 4 NM_001352316.2 32.1% 31.9% (many diffs)
42 human 113251 LARP4 La ribonucleoprotein 4 NM_001352317.2 32.1% 31.9% (many diffs)
43 human 113251 LARP4 La ribonucleoprotein 4 XM_017018757.1 32.1% 31.9% (many diffs)
44 human 113251 LARP4 La ribonucleoprotein 4 NM_001352319.2 32% 31.7% (many diffs)
45 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284523.1 46% 45.8% (many diffs)
46 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001024526.2 45.9% 45.7% (many diffs)
47 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001080948.2 45.8% 45.1% (many diffs)
48 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284522.1 45.6% 44.8% (many diffs)
49 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284521.1 38.9% 38.9% (many diffs)
50 mouse 207214 Larp4 La ribonucleoprotein domain... XM_006520675.1 38.9% 38.9% (many diffs)
51 mouse 207214 Larp4 La ribonucleoprotein domain... XM_017316524.1 38.9% 38.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1188
ORF length:
1122
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GCTTTTCGTG GAGCAGGTAG CATCTAAAGG AACTGGTTTA AATCCTAATG
121CCAAAGTATG GCAAGAAATT GCTCCTGGAA ATACTGATGC CACCCCAGTA ACTCATGGAA
181CTGAAAGCTC TTGGCATGAA ATAGCAGCTA CATCAGGTGC TCATCCTGAG GGTAATGCAG
241AGCTCTCAGA AGATATATGT AAAGAATATG AAGTAATGTA TTCTTCATCT TGTGAAACCA
301CAAGAAATAC TACAGGCATT GAAGAATCAA CTGATGGGAT GATTTTAGGA CCAGAAGATC
361TGAGTTACCA AATATATGAT GTTTCCGGAG AAAGCAATTC AGCAGTTTCT ACAGAAGACC
421TAAAAGAATG TCTGAAGAAA CAATTAGAAT TCTGTTTTTC ACGAGAAAAT TTGTCAAAGG
481ATCTTTACTT GATATCTCAA ATGGATAGTG ATCAGTTCAT CCCAATTTGG ACAGTTGCCA
541ACATGGAAGA AATAAAAAAG TTGACTACAG ACCCTGATCT AATTCTTGAA GTGTTAAGAT
601CTTCTCCCAT GGTACAAGTT GATGAGAAGG GTGAGAAAGT GAGACCAAGT CATAAGCGTT
661GTATTGTAAT TCTTAGAGAG ATTCCTGAAA CAACACCAAT AGAGGAAGTG AAAGGTTTGT
721TCAAAAGTGA AAACTGCCCC AAAGTGATAA GCTGTGAGTT TGCACACAAT AGCAACTGGT
781ATATCACTTT CCAGTCAGAC ACAGATGCAC AACAGGCTTT TAAATACTTA AGAGAAGAAG
841TTAAAACATT TCAGGGCAAG CCAATTATGG CAAGGATAAA AGCCATCAAT ACATTTTTTG
901CTAAGAATGG TTATCGATTA ATGGATTCTA GTATCTATAG TCACCCCATT CAAACTCAAG
961CACAGTATGC CTCCCCAGTC TTTATGCAGC CTGTATATAA TCCTCACCAA CAGTACTCGG
1021TCTATAGTAT TGTGCCTCAG TCTTGGTCTC CAAATCCTAC ACCTTACTTT GAAACACCAC
1081TGGCTCCCTT TCCCAATGGT AGTTTTGTGA ATGGCTTTAA TTCGCCAGGA TCTTATAAAA
1141CAAATGCTGC TGCTATGAAT ATGGGTCGAC CATTCCAAAA AATCGTGTGC CCAACTTTCT
1201TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)