Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13020
- Subject:
- NM_001352309.2
- Aligned Length:
- 2172
- Identities:
- 912
- Gaps:
- 1260
Alignment
Query 1 ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA 222
||||||||||||
Sbjct 1 --------------------------------------------------------------ATGTATTCTTCA 12
Query 223 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 86
Query 297 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 160
Query 371 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 234
Query 445 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 308
Query 519 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 382
Query 593 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 456
Query 667 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 530
Query 741 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 604
Query 815 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 678
Query 889 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 752
Query 963 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 826
Query 1037 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATTC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATTC 900
Query 1111 C-AAAAAATCGTG------------------------------------------------------------- 1122
| |||||||||||
Sbjct 901 CAAAAAAATCGTGTGAAGCCTCAGTTTAGGTCATCTGGTGGTTCAGAACACTCAACAGAGGGCTCTGTATCCTT 974
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 975 GGGGGATGGACAGTTGAACAGATATAGTTCAAGAAACTTTCCAGCTGAACGGCATAACCCCACAGTAACTGGGC 1048
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1049 ATCAGGAGCAAACTTACCTTCAGAAGGAGACTTCCACTTTGCAGGTGGAACAGAATGGGGACTATGGTAGGGGC 1122
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1123 AGGAGAACTCTCTTCAGAGGTCGAAGACGACGAGAAGATGACAGGATCTCAAGACCTCATCCTTCAACAGCTGA 1196
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1197 ATCAAAGGCTCCAACACCAAAGTTTGACTTATTAGCCTCAAATTTTCCACCTTTACCTGGAAGTTCATCAAGAA 1270
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1271 TGCCAGGTGAACTCGTTTTGGAGAATAGGATGTCTGATGTTGTTAAAGGTGTCTACAAAGAAAAGGATAATGAA 1344
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1345 GAGTTGACAATTAGTTGCCCAGTGCCTGCAGATGAGCAGACAGAATGCACTTCTGCCCAGCAACTCAATATGAG 1418
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1419 TACCAGTTCTCCATGTGCTGCTGAGCTTACTGCATTAAGCACAACTCAGCAAGAAAAGGATCTAATAGAAGATT 1492
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1493 CCTCTGTTCAGAAGGATGGTCTCAATCAGACAACTATACCAGTTTCTCCTCCAAGTACTACAAAGCCATCGAGG 1566
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1567 GCAAGTACTGCTTCACCATGTAATAATAACATAAATGCAGCTACAGCTGTGGCTCTACAGGAACCCCGAAAGTT 1640
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1641 AAGTTATGCTGAAGTGTGCCAGAAGCCCCCTAAAGAGCCATCTTCAGTTCTTGTGCAGCCACTACGGGAACTTC 1714
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1715 GCTCCAATGTGGTGTCTCCCACCAAAAATGAAGACAATGGAGCTCCTGAGAACTCCGTTGAGAAACCACATGAG 1788
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1789 AAGCCAGAAGCAAGGGCTAGTAAGGATTATTCTGGCTTCCGAGGCAATATAATCCCCAGGGGAGCAGCAGGAAA 1862
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1863 AATCAGGGAACAGAGACGCCAGTTTAGCCATAGGGCTATACCTCAGGGAGTGACTCGACGTAATGGCAAAGAGC 1936
Query 1123 -------------------------- 1122
Sbjct 1937 AATATGTGCCACCCAGATCACCAAAG 1962
