Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13020
- Subject:
- NM_001352319.2
- Aligned Length:
- 2172
- Identities:
- 696
- Gaps:
- 1476
Alignment
Query 1 ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA 222
||||||||||||
Sbjct 1 --------------------------------------------------------------ATGTATTCTTCA 12
Query 223 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT 86
Query 297 GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 370
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GAGTTACCAAATATATGATGTTTCC---GAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA 157
Query 371 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT 231
Query 445 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT 305
Query 519 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC 379
Query 593 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA 453
Query 667 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA 527
Query 741 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTA------------ 589
Query 815 AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA 888
Sbjct 590 -------------------------------------------------------------------------- 589
Query 889 ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG 962
Sbjct 590 -------------------------------------------------------------------------- 589
Query 963 TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA 1036
|||||||||||||||||||||
Sbjct 590 -----------------------------------------------------TGGCTCCCTTTCCCAATGGTA 610
Query 1037 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATTC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATTC 684
Query 1111 C-AAAAAATCGTG------------------------------------------------------------- 1122
| |||||||||||
Sbjct 685 CAAAAAAATCGTGTGAAGCCTCAGTTTAGGTCATCTGGTGGTTCAGAACACTCAACAGAGGGCTCTGTATCCTT 758
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 759 GGGGGATGGACAGTTGAACAGATATAGTTCAAGAAACTTTCCAGCTGAACGGCATAACCCCACAGTAACTGGGC 832
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 833 ATCAGGAGCAAACTTACCTTCAGAAGGAGACTTCCACTTTGCAGGTGGAACAGAATGGGGACTATGGTAGGGGC 906
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 907 AGGAGAACTCTCTTCAGAGGTCGAAGACGACGAGAAGATGACAGGATCTCAAGACCTCATCCTTCAACAGCTGA 980
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 981 ATCAAAGGCTCCAACACCAAAGTTTGACTTATTAGCCTCAAATTTTCCACCTTTACCTGGAAGTTCATCAAGAA 1054
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1055 TGCCAGGTGAACTCGTTTTGGAGAATAGGATGTCTGATGTTGTTAAAGGTGTCTACAAAGAAAAGGATAATGAA 1128
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1129 GAGTTGACAATTAGTTGCCCAGTGCCTGCAGATGAGCAGACAGAATGCACTTCTGCCCAGCAACTCAATATGAG 1202
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1203 TACCAGTTCTCCATGTGCTGCTGAGCTTACTGCATTAAGCACAACTCAGCAAGAAAAGGATCTAATAGAAGATT 1276
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1277 CCTCTGTTCAGAAGGATGGTCTCAATCAGACAACTATACCAGTTTCTCCTCCAAGTACTACAAAGCCATCGAGG 1350
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1351 GCAAGTACTGCTTCACCATGTAATAATAACATAAATGCAGCTACAGCTGTGGCTCTACAGGAACCCCGAAAGTT 1424
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1425 AAGTTATGCTGAAGTGTGCCAGAAGCCCCCTAAAGAGCCATCTTCAGTTCTTGTGCAGCCACTACGGGAACTTC 1498
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1499 GCTCCAATGTGGTGTCTCCCACCAAAAATGAAGACAATGGAGCTCCTGAGAACTCCGTTGAGAAACCACATGAG 1572
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1573 AAGCCAGAAGCAAGGGCTAGTAAGGATTATTCTGGCTTCCGAGGCAATATAATCCCCAGGGGAGCAGCAGGAAA 1646
Query 1123 -------------------------------------------------------------------------- 1122
Sbjct 1647 AATCAGGGAACAGAGACGCCAGTTTAGCCATAGGGCTATACCTCAGGGAGTGACTCGACGTAATGGCAAAGAGC 1720
Query 1123 -------------------------- 1122
Sbjct 1721 AATATGTGCCACCCAGATCACCAAAG 1746
