Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13766
Subject:
NR_135754.2
Aligned Length:
5622
Identities:
220
Gaps:
5381

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTCCAGAAAACCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCCATTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGTACCTCACTGTGGACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGGAAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGGAATCCAGCCAGTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATGTCATGATTGAGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGGACCCATTTGTCTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCTCCCCAAATCTAAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTTGAACACACATACC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAGACCATGTTCTCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAATGGTCTTGAGTAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCCCAGAGCACACACC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGGATTTTAAAAACAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATTTTTGAAGTTTTTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAAGATCTGATTTTTT  1776

Query    1  ---------------------------ATG-----GGGGGCGGAGTGAGCGGTGAACACAC--TGAACAGAA--  38
                                       |||     |||||.|.|          |||||||  |||| |.||  
Sbjct 1777  TCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAA----------AACACACATTGAA-ATAAGA  1839

Query   39  --------------TCTGA---------GAT----TTAATAAGCC--------AAA--------TCAACAATGT  69
                          |.|||         |||    ||.|||   |        |||        |||  .||||
Sbjct 1840  CCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATA---CTGACTTTGAAATATTTTTGTCA--CATGT  1908

Query   70  GGGAAG--TTC-----------------GTTTTGTTTT-TTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAG  123
             |.|||  |||                 |||||.|||| ||.||.|||||||||||||||||||||||.|||||
Sbjct 1909  -GAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCAG  1981

Query  124  GCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAG  197
            ||||.||||||.||||..||||||||||||||||||||||||||||.|.|||||||||||||||||||||||||
Sbjct 1982  GCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAG  2055

Query  198  CCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT-------------  258
            |||.||.||||||||||||.|||||||||||||||||.|||||||||||||||||||||||             
Sbjct 2056  CCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGG  2129

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2130  GTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCT  2203

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2204  GGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGTG  2277

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2278  CACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACTG  2351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2352  CCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAAC  2425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2426  AGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCAA  2499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2500  AGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAATG  2573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2574  TTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTAT  2647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2648  TTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCTA  2721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2722  CGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGCT  2795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2796  GCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACTG  2869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2870  TTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAATA  2943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2944  GGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACAT  3017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3018  GTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCTA  3091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3092  TGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGAG  3165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3166  CTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGAA  3239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3240  ATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGCA  3313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3314  GTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGAG  3387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3388  AAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCTT  3461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3462  AATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGTC  3535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3536  CAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAGA  3609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3610  AAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGTT  3683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3684  TACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCCT  3757

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3758  ATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATCA  3831

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3832  TACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCACA  3905

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3906  TTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGCT  3979

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3980  AACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACATC  4053

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4054  TTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTCT  4127

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4128  GTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCTT  4201

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4202  ATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATTT  4275

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4276  TTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAGT  4349

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4350  ACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCTA  4423

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4424  ACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACACT  4497

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4498  CTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTTT  4571

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4572  TCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTCT  4645

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4646  TCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCGG  4719

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4720  CAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGAG  4793

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4794  ACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGCA  4867

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4868  CCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAGC  4941

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4942  TGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTTC  5015

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5016  ACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTAG  5089

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5090  GAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAAG  5163

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5164  TATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGAA  5237

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5238  GGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTCA  5311

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5312  AGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAAT  5385

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5386  GATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAGT  5459

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5460  GTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCTT  5533

Query  259  ------------------------------------------------------------------------  258
                                                                                    
Sbjct 5534  GAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA  5605

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