Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744522.1
- Aligned Length:
- 5932
- Identities:
- 222
- Gaps:
- 5689
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCCCCTGAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATTGGAATGCTGAATAATGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTGGAATGTTGAATAATGTTGAATACCTTCCTATGGTATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CATCTATGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGCTTACTTGGGGATGAACAAGTTCCTCAGGCAGAGTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCTTTCCTATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATTAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACT 3108
Query 1 ------------------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAG 44
|||| ||..| |||| || ||| |||| |||||| ||.
Sbjct 3109 ATAAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT-AACAGA----GAA 3169
Query 45 ATTTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG----------------------------- 75
.||||||||..|.| ||.||.| |||| |.|||
Sbjct 3170 CTTTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTG 3242
Query 76 -----------TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGG 124
||| ||||||||||| ||||||||||.|||||||||||||||||||||||
Sbjct 3243 TGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGG 3315
Query 125 CTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGC 198
|||.||||||.||||.|||||||||||||||||||||||||||||...||||||||||||||||||||||||||
Sbjct 3316 CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGC 3389
Query 199 CTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT------------- 258
||.||.|||||||||||||||||||.||||||||||.|||||||| |||||||||||||||
Sbjct 3390 CTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGG 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 GGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGT 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 TTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATA 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 CCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTT 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 GTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACA 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 AGATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 AAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGT 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 TAGCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTT 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 GGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCT 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 AGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGG 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 GAAAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAA 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 TATGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAAT 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 TTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGC 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 TAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAG 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 CAAACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGG 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 CTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAG 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 ACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAAT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 TGAGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGG 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 GCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCC 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 TACCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTAT 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 CTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 ACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAA 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 AGCAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTT 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 AGAATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCT 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 GAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 TCAGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 TAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 AAAACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 CAGCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCA 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 ATAAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGC 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 CAGACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAG 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 AAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTT 5757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5758 CTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACC 5831
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5832 ACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAA 5905
Query 259 ------------ 258
Sbjct 5906 TTACAAATGCAA 5917
