Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_929618.3
- Aligned Length:
- 6486
- Identities:
- 211
- Gaps:
- 6256
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACACTTTTCAACATGTTTTATGAGTCTACCGTTATCCCCATACCAAAACCATAAAACAGACATTACAAGAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTCCTGTAGACAAATATGTATTTTGATGATGAATTTAGATTTCAAAAACTTCAGCAAAATATTATCCAATTAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCCTCTCATGTCTGTGTGTGTGTGTGTGTGCATGCACGTGTGTTTGTAAAATATATCATTACTAATTGGCGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATCTTGGGAGTTCAAGATGGTTTCCATATTCAATCAACCCATCAATGTGGACTATGGTCACTTGAAAAGACCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCAAATCCTCTGCACAAAAGGCCACTAGAAATTCATTAAAGCAGCCTTCCATCATTCTCGAAATTGACCAAAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTCAACTACCTGAGAAATATTTATGTTTGGAAAGCTATTGAAATGCAATTAAAAATATCAGGAAACCTGTTTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TACCTTTTGTCCTAATCTTGCTAAATCCTTCTTAATTTTAGGAGACACTGCTTCTCCTTCCACTGTTCTTTTAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTCTCCTTCCCCTTTGTTTTTGCCTCCCCCTTCCTCTCCCTTTTCTACATTCCTTCTCTCTCCTAAATGCTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATAAATTTCTACATATGTAATCATATTATTTACAAATAGGAACAGTTTTACTTATTTCTTTCCAGTCTGCATTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTTTATTCTTCCTTTTTTTCCTTACACACTGGATAGAACTCTAAGTATTATGTTGAAAAAGAGTGATAAAAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAACATCTTTGCTTTATTCCTGAGCATACATGTGGAAAACATTCAGTGTTTCACAGCTAAATATGATGGATTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTGTATGCTCTTTATCAAGATGAAGGAATTTTCTGCTATTTCTGGTTTGCTGAATTTTTATCACAAGTAACTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAATAGTGTCTTTTTCCCCTGCATTTATTGAACTGATCATGCATTCTCCTATTTTAGAATATTAATATGATGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACTATATTATTAGATTTTTTAAAATATTGCAACTGTCTTGCATTTCTGGAATAAACATGGCTTGGTCATGTGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACTTTTTTACATAGTGTCGTATTCAAGTTGTCGAGGATTTTGCATCTAGGGTATATTTGTAGATTTGCATCTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTTATGTTGGTCTAAAGTTTTGTTTGTTTGTTTTCCTTTTCTTTTTTTTTATCATCTTTGTCTTCTTCTGTTTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTGTCATGCTTGCTTCATAAAATGAATTGAGAAGCATTTCTTCCTCTTCTGTTTCTCGAAAATTGTAGAGAAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTTGTTTTTTGTTGTTGTTTGTTTGTTGTTTTGTTTTTTCTTATTTTTATCCTCATACTGAGAACCAAACAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGGAGTGTAAAACATGGTTCCTCATTCCAGTTAAATCTAGTATACAATGACAACAACCCTCTTGGGTTAAGCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGGCCTACAAACAGAAAAAAACCTTCAGGGAGATAGATGCTGATCTAGGCATTGTGAGAAAAGCTGAATTCAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTTAATCATGAATGGCTTTTAAGGAAAGAAGATTTATTAACTAAAATAAATAGATTAGAGGGAATTCTCACCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGAGAGAGGAAGGGATGGGATTCAACCTGGAAAAAGTAATGAAGTTTTAGTGAACTTGGTAAGGTAGACTCAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATTAATGATGGATAATGCTAGGACCCAACACTGGTAATGAGTTTGTATTATGACTCAATAGCATCACTTTAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CACTTTAACACAGATGGAGGCCTAAATAACCATAGGGTAATGGTTCTTCTTAGATGCAGAAGGACACATTTATA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TAATCTTAGGGACCCCATCTCTGAGGTCACTCATAATTTATATTAATTCATTGTTATTGCCATTGCCCCAAGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAGATAAGGATAAGACATCCTGTAGTACAGGTAGCAGAGATATAAACTATTCTTATTCTTGTGTCTTGTCTATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGAAGGGAGTGTATCCTGGTGTAAGACAGCATATAGTAGAGACCATTGTCAATTAGGGCCTGTGAACTAAGACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGGTGACTGGCTAAGTCCACAACCCATTAGAAACCCAGAAATAATCAAATCATGGTGAGTAGTAATAACACTTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTATAATACTATACGGTATAAAGACAAGAACCAATTATGTTGAGTAGCTGTAACAAATAGCTCTATCATTCGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AATAACTTTTTCTGTAATAAAACTGAATTGTAACATGATCATACTGCAATATGACATTACACTAGCATTGTTGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAGATTCAACTATCTTATGTAGAGAAGTTATATAATGCTTATATTGATAATCAAATGTATTAAGATATTGAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TAAAGCCTCTTCAGAATGTAATCTGGGTGAATAATAAATGGCCTGAGAAAACAGAATTCAGCTAACCATTATCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATTTCAATGCTAAATAGTTCTGCACAGATTTATCAAAAAGTAAAAATAAAAGCAGATTGAGAGGAGGAATGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAATTTTGTTTGTACAAAATATTAAAGTGTATGTAATGGGCTTGTAGGATGCATTAGTAATTTTTAAAAATCAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTTTACCCTACACTGTGTCCATAAAATGCTAGGCATATTCATGTTAATATTACTGTTGTTACTGTCATATAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGCCATATTCAATGTAGATGCTCAGAAAAATATGATTGTTTTGCTACAGGAGAGATTAGACCAGGGACAATAAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TATGGATTAGGCAAGAATGTGTTAACTCAGCAGCCCAGGGTTTTTTCAACCCTGCACATTCAAAGGTAAGGTTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTTTTTAGGACTAGCTAGCCTCTGAGTTCTGGAAATAGTCTTACCGTGAAGAGTGTTTTTGTATATCTGAGGCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTGGGTTTATGGTGAATGACTGACTTATATGCCTGAGGCCCTGAGCCATGCTGTATTTATTTGAACCATGTGGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATCAATTTAACCAGATACGTTTATTCTAAGATATGATTTATGCTGAATGCCTGGTTTTGTTCTAGAGGGATCAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGAAAGGAAGCTGAATTTGCCAAGTTTTGCCACTTGGGCATTGCATGCCTATGTGATTAACCACCAATAAAAAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTGGGACATCAAAGAATAAATAAGCTGCTCTAATTGCCAAGAATTCACATGTGGTTGTATGCAGCTTTACTGGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGACTGAAGTGTATCTGCATGTGATTCTGCTGTGATGGACACTTGATCTTGAGATGACGTCATACTGGATGATC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTAGTGCACCCTAAATCCAATAAGTGTTCTTATGAAAGACAGAAGAGGAGAAGATACAGGAAATAGAAGAAGGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TACTTGAGGATGGAAGCAGAGATTGGAGTTATGCAGCTACAAACCAAAGAATGCCTTGAGCCACCAGCAGCTGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAGAGCTAGTCAGCAATACAACTGGGATTTGATATCAGATTCATACGATTCCGAAGACCCTGACCACCAAATGC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAAAGATGCTGTAGTCTGAGTAGCTGAAATCACTCATATAGGCACCACCTTACATGACTGATGCCCAGTAAAAG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCCTGGAGACCAAAACTTAAATGAGCTTCTCTGATTGACAACACTTCAATATGCTGTCAAATATTGTTGCTGGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGAATTACGTGTGTTCTTATGGGATTCCACTGGGAGAGGACACCTGAAAGCTTGTACCTGATATCTTCTACATT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TCTCCCCATGGGCTTTTTTTCTTTGTTGATTTTAATCTGTATCTTTTCATTGTAGTAAACTGTAACTATGAATG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TAATGTGTTTTCTAAGACCTGTGAATCATTATAGTTAATCTTTGAGCCTAAGGGTGGTCATAAGGAGCCCCAAC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ACACTAATAAATTACTTTCATAAAGAATATATAAAAGCTGTCAAAAATCAAAAATAAAACAAATCACCCAATTT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTTAAAAGGCAAAAGATTGAAAAAGACGTCATGATAGAAGACATGGATGACAAATAAGTATATCAAAAAATTTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AACATCTGTAGTCATTAAAGAATTGAAAACCACAAAGAAATACTACTGATAGTTATTACAATGTCCAAAGTGAA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAAAAATATTGACCCTACCAGGTATATGCAACAAAATGGAGGAACTGAAACGTTAATATACTTTTGATTGACAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CCACTTTGTAAAATAGATAGATTGACAGCTTCTTAAAAAAGTAAACCTATGCTTACCACTTAATCTAGTCATTT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 ATCTTCTAGATATTTCCCCCTCGAAAAATGAAAAAGAAATTGTTGTATATAAATATTCATAGGCATTTTCTCTT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TAATAGCTAAAATGTGGTCATGACCCACATATTCATTAACAAGTAATTGGTGATATATACGTACAGCAAAATTC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TGCTCAGCAATGAAAAGGTTCGACTACTGACACATGCAACAACATGAATGAATTTCAAAAGAATTTTGCTGTAA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGCAAAAATGCCAGCCAAAAAATAGTGCACCTTATATGATTCCATTTATATAAAACTTCTGGATGCACCAATAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 ACAATATACAGTAATATACAATACTGAAAGATGGTCAGCAGTTGTCTAGCTAAGATGCTTATTAGGAGAGACAA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TAATTGCAAAAGGGGATTATTAAAAGTAGTCATGAGGAAACATTTTGTGGATTTATATGTTCACTATCTTGACA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 ATAATGATGATCTCACGGATGTATAAATATGTCAGAGCATATCTAATAATTTATCTTACATATTTTTGGCTTTT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AATATGTTAATTATAGCTCAATAAATTTCTTAAAAACTCATTGGACTCTATCTGTAATGTGTGTATGTTTAGTT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TTAAGTAGAGTGCAGCTAAATTTTTCTCCACCATTACAATTTTCAAACATACTTTCACTTACAGAATAGCATAC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGAAAATTAACACATGCTTTTATAATTATAAATAAAATAGTAATATATCATTTCTGCTGAAATAAATGCAAACC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 AATTACAAGGAATTTATTAGTTTTTATTTTAGTTACTTCATATATATTAGCATCTAAGCCTCAAAGATTCACTA 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 TGTAATTGTGTAAATTAGTAGTAGGGTTACCTGAATCTGGCTTAATAGTGAATTAATCAGTATTTATCTTTAAA 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 CATTTTTTCCTTTATGAATTGTGTCACACTTTTAAAGAGCCCTTCCTACATTACAAGCATGTATAAAATATATT 5180
Query 1 ---ATGGGGGGCGGAGTGAGCGGTGAACACACT------GAA------CAGAA------------TCTGAGATT 47
|| ||| ||| ||||| ||| |||||
Sbjct 5181 CTTAT-------------------------ACTATTTTAGAATAATTTCAGAAGTTAGATTGTTTTCT-AGATT 5228
Query 48 TA------------ATAAGCCAAAT-------------CAACAATGTGGG-----AAGTTCG------------ 79
|| ||| |||||| ||..|||||..| |||||.|
Sbjct 5229 TAGTGTTTTCATTGATA--CCAAATTTATTTTTATGTACATAAATGTATGATTTTAAGTTAGATTATTTCAAAC 5300
Query 80 ----------------------------------------TTTTGTTTTTTTTTTTTGAGACGGAGTCTCGCTC 113
||||.|||||||||||||||||||||||||||||
Sbjct 5301 TGGTATCCCTGCAATTATCTGAACAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTC 5374
Query 114 TGTCACCCAGG-----CTGC--AGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACG 180
||||.|||||| |||| |.||||.||||.|.||||||||||||||||||||||||.||.||||||||||
Sbjct 5375 TGTCGCCCAGGCCAGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCAGGTTCACG 5448
Query 181 CCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTA 254
||||||||||||||||||||.||.||||||||||||||||||||||||||||...|||||||||||||||||||
Sbjct 5449 CCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACTGCGCCCGGCTAATTTTTTGTA 5522
Query 255 TTTT---------------------------------------------------------------------- 258
|.||
Sbjct 5523 TATTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCT 5596
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5597 CGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCGACCGCGCCCGGCCCAACAAAATTTTTAAGTAGTCACAT 5670
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5671 TGACTTTTTTTTCAAAAGTTAGTTTTAAGCTATTTGATAACATATGGATCTACTTCACTAAAGTTGTATTTTTG 5744
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5745 TGTGTAATTCTTTAATCCATCTGGAGATATTTTGGTTGTTTTTCGATCAGATAGCCAGTTAAACCAGAAAGAAA 5818
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5819 AATCTTACCAAAAAGTTTCCACTTAGAAAATTTAATAGCCAAAAAAACTAATATATGCAAGAATGAACAAAAAC 5892
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5893 ATATTGATAAAAGTTATACATCATATTTTTATTGAAATATTTCATAATGAAATGTTTCACATGGTTAAAGAACT 5966
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5967 ACAAATTCATCCAGTGTAAATAAAAACTTCATGGGAAATGTATAATATATGAGGGATTATTTGATATCTGAAAA 6040
Query 259 -------------------------------------------------------------------------- 258
Sbjct 6041 AACTAGATAGAAAATAAATGCTTAAAAACTTCTAGAAGGTAATCCAGTAGAGTATTTATCAGCTTAGGCTAACA 6114
Query 259 -------------------------------------------------------------------------- 258
Sbjct 6115 AATGATATAAACATGATTAAAGAAGAGCTAAACTTGAATAAAAATATTAAGTTGATGACAAGTGTAAAACACCA 6188
Query 259 -------------------------------------------------------------------------- 258
Sbjct 6189 TTCTTCAAAATATGCAATTACAAATAGGAAAGTGCTAATAGGAGAAAAAATAAGATGTTTATAATGCAAAAAGT 6262
Query 259 -------------------------------------------------------------------------- 258
Sbjct 6263 ATTAACATTCAAAACTGTTGATAATATAAAGAAAGATATTATAAGGAAAAGTATTCCAGTATTAGAGTAGCCTA 6336
Query 259 -------------------------------------------------------------------------- 258
Sbjct 6337 AGTATAAGGCAATTTGAAGAAAGAAAAGAGGAATCATGAATAGGTTTATCAATCCTGATTCCATCTCACCAGTG 6410
Query 259 ------------------------------------------------ 258
Sbjct 6411 ATTAGACTGGTAAATAAGAAAATGTGTGATAATACCAAGGGTAATAAA 6458
