Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13848
- Subject:
- NM_007912.4
- Aligned Length:
- 3432
- Identities:
- 1539
- Gaps:
- 1626
Alignment
Query 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
|||||||||||.|||||.||..|..|..|.||.||||.|.|||||.|.|||||||||.|.||..||.||||..|
Sbjct 1 ATGCGACCCTCAGGGACCGCGAGAACCACACTGCTGGTGTTGCTGACCGCGCTCTGCGCCGCAGGTGGGGCGTT 74
Query 75 GGAGGAAAAGAAAGTTTGCCAAGGCACGAGTAACAAGCTCACGCAGTTGGGCACTTTTGAAGATCATTTTCTCA 148
|||||||||||||||.|||||||||||.|||||||.||||||.||..||||||||||||||||.||.|||||.|
Sbjct 75 GGAGGAAAAGAAAGTCTGCCAAGGCACAAGTAACAGGCTCACCCAACTGGGCACTTTTGAAGACCACTTTCTGA 148
Query 149 GCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTTGGGAATTTGGAAATTACCTATGTGCAGAGGAATTAT 222
||||.||||||||||.|||.||||||||.||||||||||||||.||||||||||||||||||||.||||||||.
Sbjct 149 GCCTGCAGAGGATGTACAACAACTGTGAAGTGGTCCTTGGGAACTTGGAAATTACCTATGTGCAAAGGAATTAC 222
Query 223 GATCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCTGGTTATGTCCTCATTGCCCTCAACACAGTGGAGCGAAT 296
||.||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||.||||
Sbjct 223 GACCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCCGGCTATGTCCTCATTGCCCTCAACACCGTGGAGAGAAT 296
Query 297 TCCTTTGGAAAACCTGCAGATCATCAGAGGAAATATGTAC--TACGAAAATTCCTATGCCTTAGCAGTCTTATC 368
.||||||||.|||||||||||||||||.|||| |||..| ||.|||||..|||||||||||||..||.|.||
Sbjct 297 CCCTTTGGAGAACCTGCAGATCATCAGGGGAA--ATGCTCTTTATGAAAACACCTATGCCTTAGCCATCCTGTC 368
Query 369 TAACTATGATGCAAATAAAACCGGACTGAAGGAGCTGCCCATGAGAAATTTACA------------TGG----- 425
.|||||||...||||.|.|||.||.||.|.|||.|||||||||.|.||.||||| |||
Sbjct 369 CAACTATGGGACAAACAGAACTGGGCTTAGGGAACTGCCCATGCGGAACTTACAGGAAATCCTGATTGGTGCTG 442
Query 426 ------------ACAA---------------------------------------------------------- 429
||||
Sbjct 443 TGCGATTCAGCAACAACCCCATCCTCTGCAATATGGATACTATCCAGTGGAGGGACATCGTCCAAAACGTCTTT 516
Query 430 ------------------------------------------------AAGTGTGATCCAAGCTGTCCCAATGG 455
||.|||||||||||||||||||||||
Sbjct 517 ATGAGCAACATGTCAATGGACTTACAGAGCCATCCGAGCAGTTGCCCCAAATGTGATCCAAGCTGTCCCAATGG 590
Query 456 GAGCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGC 529
.|||||||||||.|.||||||||||||||||||||||.|||||||||||||||||||||||||.||.|||...|
Sbjct 591 AAGCTGCTGGGGAGGAGGAGAGGAGAACTGCCAGAAATTGACCAAAATCATCTGTGCCCAGCAATGTTCCCATC 664
Query 530 GCTGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGC 603
||||.|||||||.|||||||||||||||||||||||||||.||||||||.||.||.|||||.|||||.|||||.
Sbjct 665 GCTGTCGTGGCAGGTCCCCCAGTGACTGCTGCCACAACCAATGTGCTGCGGGGTGTACAGGGCCCCGAGAGAGT 738
Query 604 GACTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAA 677
|||||.||||||||||..||.||||.|||.||.|||||.|||||.|||||||||||.|||||||||||.|||||
Sbjct 739 GACTGTCTGGTCTGCCAAAAGTTCCAAGATGAGGCCACATGCAAAGACACCTGCCCACCACTCATGCTGTACAA 812
Query 678 CCCCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTC 751
|||||||||.||.|||||||||||.|||||.||.||.||.||||||||||||||||||||.|||||||||||.|
Sbjct 813 CCCCACCACCTATCAGATGGATGTCAACCCTGAAGGGAAGTACAGCTTTGGTGCCACCTGTGTGAAGAAGTGCC 886
Query 752 CCCGTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAA 825
||||.||.||.||||||||||||||.|||||.||.|||||||||||||||.|.|||..|||.||..||||.|||
Sbjct 887 CCCGAAACTACGTGGTGACAGATCATGGCTCATGTGTCCGAGCCTGTGGGCCTGACTACTACGAAGTGGAAGAA 960
Query 826 GACGGCGTCCGCAAGTGTAAGAAGTGCGAAGGGCCTTGCCGCAAAGTGTGTAACGGAATAGGTATTGGTGAATT 899
||.|||.|||||||||||||.||.||.||.|||||.||.||||||||.|||||.||.|||||.|||||||||||
Sbjct 961 GATGGCATCCGCAAGTGTAAAAAATGTGATGGGCCCTGTCGCAAAGTTTGTAATGGCATAGGCATTGGTGAATT 1034
Query 900 TAAAGACTCACTCTCCATAAATGCTACGAATATTAAACACTTCAAAAACTGCACCTCCATCAGTGGCGATCTCC 973
|||||||.|||||||||||||||||||.||.||.||||||||||||.|||||||..|||||||.||.||.||.|
Sbjct 1035 TAAAGACACACTCTCCATAAATGCTACAAACATCAAACACTTCAAATACTGCACTGCCATCAGCGGGGACCTTC 1108
Query 974 ACATCCTGCCGGTGGCATTTAGGGGTGACTCCTTCACACATACTCCTCCTCTGGATCCACAGGAACTGGATATT 1047
||||||||||.|||||.||||.|||.||.||.|||||.|..|||||||||||.||.||||..|||||.||.|||
Sbjct 1109 ACATCCTGCCAGTGGCCTTTAAGGGGGATTCTTTCACGCGCACTCCTCCTCTAGACCCACGAGAACTAGAAATT 1182
Query 1048 CTGAAAACCGTAAAGGAAATCACAGGGTTTTTGCTGATTCAGGCTTGGCCTGAAAACAGGACGGACCTCCATGC 1121
||.|||||||||||||||||.|||||.||||||||||||||||||||||||||.|||.||||.|||||||||||
Sbjct 1183 CTAAAAACCGTAAAGGAAATAACAGGCTTTTTGCTGATTCAGGCTTGGCCTGATAACTGGACTGACCTCCATGC 1256
Query 1122 CTTTGAGAACCTAGAAATCATACGCGGCAGGACCAAGCAACATGGTCAGTTTTCTCTTGCAGTCGTCAGCCTGA 1195
.||.||||||||||||||.|||||.|||||.||.|||||||||||||||||||||.|.||.|||||..||||||
Sbjct 1257 TTTCGAGAACCTAGAAATAATACGTGGCAGAACAAAGCAACATGGTCAGTTTTCTTTGGCGGTCGTTGGCCTGA 1330
Query 1196 ACATAACATCCTTGGGATTACGCTCCCTCAAGGAGATAAGTGATGGAGATGTGATAATTTCAGGAAACAAAAAT 1269
||||.|||||..||||..|.||.||||||||||||||.||||||||.||||||||.|||||.||||||..||||
Sbjct 1331 ACATCACATCACTGGGGCTGCGTTCCCTCAAGGAGATCAGTGATGGGGATGTGATCATTTCTGGAAACCGAAAT 1404
Query 1270 TTGTGCTATGCAAATACAATAAACTGGAAAAAACTGTTTGGGACCTCCGGTCAGAAAACCAAAATTATAAGCAA 1343
||||||||.|||||.||||||||||||||||||||.||.|||||..||..|||||||||||||||.||.|.|||
Sbjct 1405 TTGTGCTACGCAAACACAATAAACTGGAAAAAACTCTTCGGGACACCCAATCAGAAAACCAAAATCATGAACAA 1478
Query 1344 CAGAGGTGAAAACAG-CTGCAAGGCCACAGG----CCAGGTCTGCCATGCCTTGTGCTCCCCCGAGGGCTGCTG 1412
|||||.|||.|| || |||||||||| | |||.||||||.||.|.||.||||||.|.||.||||||||
Sbjct 1479 CAGAGCTGAGAA-AGACTGCAAGGCC----GTGAACCACGTCTGCAATCCTTTATGCTCCTCGGAAGGCTGCTG 1547
Query 1413 GGGCCCGGAGCCCAGGGACTGCGTCTCTTGCCGGAATGTCAGCCGAGGCAGGGAATGCGTGGACAAGTGCAACC 1486
||||||.||||||||||||||.|||||.||||.||||||.|||.||||||||||.||||||||.||.||||||.
Sbjct 1548 GGGCCCTGAGCCCAGGGACTGTGTCTCCTGCCAGAATGTGAGCAGAGGCAGGGAGTGCGTGGAGAAATGCAACA 1621
Query 1487 TTCTGGAGGGTGAGCCAAGGGAGTTTGTGGAGAACTCTGAGTGCATACAGTGCCACCCAGAGTGCCTGCCTCAG 1560
|.||||||||.||.|||||||||||||||||.||.|||||.|||||.||||||||.|||||.||.|||||.|||
Sbjct 1622 TCCTGGAGGGGGAACCAAGGGAGTTTGTGGAAAATTCTGAATGCATCCAGTGCCATCCAGAATGTCTGCCCCAG 1695
Query 1561 GCCATGAACATCACCTGCACAGGACGGGGACCAGACAACTGTATCCAGTGTGCCCACTACATTGACGGCCCCCA 1634
|||||||||||||||||.|||||..||||||||||||||||.|||||||||||||||||||||||.|||||.||
Sbjct 1696 GCCATGAACATCACCTGTACAGGCAGGGGACCAGACAACTGCATCCAGTGTGCCCACTACATTGATGGCCCACA 1769
Query 1635 CTGCGTCAAGACCTGCCCGGCAGGAGTCATGGGAGAAAACAACACCCTGGTCTGGAAGTACGCAGACGCCGGCC 1708
|||.||||||||||||||.||.||..||||||||||.||||||||.||||||||||||||.|||||.|||....
Sbjct 1770 CTGTGTCAAGACCTGCCCAGCTGGCATCATGGGAGAGAACAACACTCTGGTCTGGAAGTATGCAGATGCCAATA 1843
Query 1709 ATGTGTGCCACCTGTGCCATCCAAACTGCACCTACGGATGCACTGGGCCAGGTCTTGAAGGCTGTCCAACGAA- 1781
||||.||||||||.|||||..|.|||||.|||||.|||||..||||||||||||||.||||.||| |||
Sbjct 1844 ATGTCTGCCACCTATGCCACGCCAACTGTACCTATGGATGTGCTGGGCCAGGTCTTCAAGGATGT-----GAAG 1912
Query 1782 --TGGGCCTAAGATCCCGTCCATCGCCACTGGG--------ATGGTGGGGGCCCT------CCTCTTGCTGCTG 1839
||| |||| ||||| ||||..|.||..|| |||.||
Sbjct 1913 TGTGG--------------CCAT-----CTGGGTACGTTCAATGGCAGTGGATCTTAAAGACCTTTT------- 1960
Query 1840 GTGGTGGCCCTGGGGATCGGCCTCTTCATGCGAAGGCGCCACATCGTTCGGAAGCGCACGCTGCGGAGGCTGCT 1913
|||||
Sbjct 1961 -------------GGATC-------------------------------------------------------- 1965
Query 1914 GCAGGAGAGGGAGCTTGTGGAGCCTCTTACACCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGA 1987
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 1988 AGGAAACTGAATTCAAAAAGATCAAAGTGCTGGGCTCCGGTGCGTTCGGCACGGTGTATAAGGGACTCTGGATC 2061
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2062 CCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAA 2135
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2136 GGAAATCCTCGATGAAGCCTACGTGATGGCCAGCGTGGACAACCCCCACGTGTGCCGCCTGCTGGGCATCTGCC 2209
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2210 TCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAA 2283
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2284 GACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCG 2357
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2358 TCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATT 2431
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2432 TTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGG 2505
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2506 ATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAGTGATGTCTGGAGCTACGGGGTGACCGTTTG 2579
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2580 GGAGTTGATGACCTTTGGATCCAAGCCATATGACGGAATCCCTGCCAGCGAGATCTCCTCCATCCTGGAGAAAG 2653
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2654 GAGAACGCCTCCCTCAGCCACCCATATGTACCATCGATGTCTACATGATCATGGTCAAGTGCTGGATGATAGAC 2727
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2728 GCAGATAGTCGCCCAAAGTTCCGTGAGTTGATCATCGAATTCTCCAAAATGGCCCGAGACCCCCAGCGCTACCT 2801
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2802 TGTCATTCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATG 2875
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2876 AAGAAGACATGGACGACGTGGTGGATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCC 2949
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 2950 ACGTCACGGACTCCCCTCCTGAGCTCTCTGAGTGCAACCAGCAACAATTCCACCGTGGCTTGCATTGATAGAAA 3023
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 3024 TGGGCTGCAAAGCTGTCCCATCAAGGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGA 3097
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 3098 CTGAGGACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTGGCTTGTCTGGAAACAGTCCTGCTCCTCA 3171
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 3172 ACCTCCTCGACCCACTCAGCAGCAGCCAGTCTCCAGTGTCCAAGCCAGGTGCTCCCTCCAGCATCTCCAGAGGG 3245
Sbjct 1966 -------------------------------------------------------------------------- 1965
Query 3246 GGAAACAGTGGCAGATTTCCAGACACAG 3273
Sbjct 1966 ---------------------------- 1965
