Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14206
Subject:
NM_001267827.1
Aligned Length:
2441
Identities:
399
Gaps:
2028

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTCCTACCGACCACAATCCAGCCCCAAACTGCAAGAAAGAGCCAGCTGCCCCGGGGGAATTCCTGCCTGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGGCTCCATATCGCCAGCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAGCCACAGTCCTGCTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAAGTGACTTATGCCAACCTCCTGCTCAGGGGTTTGTACAGAGACCACTGCCAGCCCTCCAGGTGGTCCCTGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGAGAGTCCCAGCCCCCAAGGCTCCAGATGAACAGGGCTCCATGTTGACCCCTTTGTCTGCCTCTGACCCGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCAGTAACATCTCTTTCATCCAGTTCAGCACATCCATTTATTTCCAACTTGCATACAAGACATACTGAGAAAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TAAAAAAATCGTTAAAAGTAAAGACACGTTCTGGACGGGTATCTCGACCTCCCAAATATAAAGCTAAAGATTAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGTTCATAAAAACAGAGGATCTGGCGGATGGTCATCTGTCAGATTCTGATGATTACTCAGAACTCTGTGTGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAAGATGAAGATCAGAGGGAGAGGCACGCACTCTTTGACTTATCGAGCTGCTCCCTGAGGCCCAAAAGCTTTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTGTCAGACTTGTGAAAAGTCATATATAGGGAAGGGGGGACTGGCCCGACATTTTAAACTTAACCCAGGCCAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGCCAGTTGGACCCCGAGATGGTGCTGTCTGAGAAAGCCAGTGGAAGCACCCTCCGGGGGTGCACGGAGGAAAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GACGCTCAGCCTGACCTCCCTGGGGCTGTCCATGCCAGCGGATCCATGTGAGGGAGGGGCCCGCTCCTGCTTGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGACAGAGTCAGCACGCGGTGGCCTGCAGAATGGTCAGTCTGTAGACGTTGAAGAGACATTGCCATCTGAACCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAAAATGGAGCTCTTTTGCGATCAGAGAGATACCAAGGACCTAGAAGACGCGCATGCTCAGAGACCCTTGCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCCCGCACAGCTGTCCTCCAGCAGAGAAGAGCTGCTCAGCTACCTGGTGGCCCTGCTGCGGCAGGGGAGCAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGCGTCGCCAAGCAAAGCCAGGCTCAAGGAGTTCCTCCAGCAGTGTGACCGGGAGGATCTGGTGGAATTGGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTGCCTCAGCTGGCTCAGGTTGTGACCGTGTATGAGTTTCTTCTGATGAAGGTTGAAAAAGATCATCTAGCAAA  1184

Query    1  ----------------------------------------------ATGGTTAAG-AAATGTGCCAAGATTACC  27
                                                          ||||||||| ||||||||||||||||||
Sbjct 1185  GCCTTTTTTCCCAGCTATATATAAGGAATTTGAAGAGTTGCATAAAATGGTTAAGAAAATGTGCCAAGATTACC  1258

Query   28  TCAGTAGTTCTGGTCTGTGTTCCCAGGAGACCCTGGAAATAAACAATGATAAGGTTGCTGAGTCATTAGGAATC  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCAGTAGTTCTGGTCTGTGTTCCCAGGAGACCCTGGAAATAAACAATGATAAGGTTGCTGAGTCATTAGGAATC  1332

Query  102  ACAGAATTCCTACGGAAGAAAGAAATACACCCAGACAACCTTGGACCCAAGCACCTCAGCCGAGACATGGATGG  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ACAGAATTCCTACGGAAGAAAGAAATACACCCAGACAACCTTGGACCCAAGCACCTCAGCCGAGACATGGATGG  1406

Query  176  GGAGCAGCTAGAGGGAGCTAGCAGCGAGAAGAGGGAACGTGAGGCTGCGGAGGAGGGACTGGCCTCAGTGAAAA  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGAGCAGCTAGAGGGAGCTAGCAGCGAGAAGAGGGAACGTGAGGCTGCGGAGGAGGGACTGGCCTCAGTGAAAA  1480

Query  250  GGCCCAGAAGAGAAGCCCTGTCCAACGATACCACTGAATCTCTTGCTGCCAACAGCAGAGGCCGGGAGAAGCCC  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGCCCAGAAGAGAAGCCCTGTCCAACGATACCACTGAATCTCTTGCTGCCAACAGCAGAGGCCGGGAGAAGCCC  1554

Query  324  AGGCCCTTGCATGCTTTGGCCGCTG--------------GTACAAT---AGTGTC---------TCAGGAGGAG  371
            |||||||||||||||||||||||||              ||| |||   |.||||         ||.|.||.|.
Sbjct 1555  AGGCCCTTGCATGCTTTGGCCGCTGGTTTTTCCCCTCCAGTA-AATGTGACTGTCTCTCCCCGTTCTGAAGAAA  1627

Query  372  GACATTGTCACAGTGACTGAT-------GCAGAGGG-GCGTG---CCTGCGATGGGCCCGC-------------  421
            |.|||    |||..|||.|.|       |||..||| |||||   |..||   ||||||||             
Sbjct 1628  GCCAT----ACAACGACGGTTTCTGGTGGCAATGGGAGCGTGTTCCAGGC---GGGCCCGCAGCTTCAGGCACT  1694

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1695  GGCTAACTTAGAAGCCAGGAGGGGGTCTATAGGTGCTGCTCTCTCATCCCGGGATGTCAGTGGGCTGCCTGTTT  1768

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1769  ATGCTCAGTCAGGAGAGCCTAGGAGGCTGACCCAGGCACAGGTGGCAGCGTTTCCTGGAGAGAATGCTTTGGAA  1842

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1843  CACTCTTCAGACCAGGACACCTGGGACAGCCTGAGGAGCCCGGGTTTCTGCAGCCCTTTGTCATCTGGTGGTGG  1916

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1917  AGCAGAGTCCCTGCCGCCTGGGGGGCCTGGACATGCAGAGGCAGGACACCTCGGCAAGGTTTGTGACTTCCACC  1990

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1991  TGAACCACCAGCAGCCCAGCCCCACCAGCGTCCTGCCTACAGAGGTGGCAGCCCCTCCGCTTGAGAAAATTTTG  2064

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 2065  TCTGTGGATAGCGTGGCAGTGGACTGTGCCTACAGGACTGTGCCCAAGCCAGGGCCTCAGCCTGGCCCACATGG  2138

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 2139  ATCACTATTGACTGAAGGGTGTCTCAGAAGCCTTTCGGGGGACTTGAACCGGTTCCCCTGTGGGATGGAGGTGC  2212

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 2213  ACTCTGGCCAGAGAGAACTGGAGAGCGTGGTTGCTGTCGGCGAAGCCATGGCTTTTGAAATTTCCAATGGGAGC  2286

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 2287  CATGAGTTACTGTCTCAGGGACAGAAGCAGATTTTTATTCAGACTTCCGATGGGCTTATCTTGTCCCCTCCAGG  2360

Query  422  -------------------------------------------------------------------------  421
                                                                                     
Sbjct 2361  TACAATAGTGTCTCAGGAGGAGGACATTGTCACAGTGACTGATGCAGAGGGGCGTGCCTGCGGATGGGCCCGC  2433

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