Construct: ORF ccsbBroadEn_14206
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008394.1_s300c1, BRDN0000396143
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF839 (55778)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_017021451.2 | 25.4% | .9% | 1_1230del;1240delA;1642delG |
| 2 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_017021450.1 | 23.5% | .8% | 1_1368del;1378delA;1780delG |
| 3 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_017021449.2 | 22.3% | 1% | (many diffs) |
| 4 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_017021448.2 | 21% | .7% | 1_1578del;1588delA;1990delG |
| 5 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_011536950.3 | 20.2% | .7% | (many diffs) |
| 6 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_011536949.3 | 20% | .7% | 1_1680del;1690delA;2092delG |
| 7 | human | 55778 | ZNF839 | zinc finger protein 839 | NM_001267827.1 | 16.3% | .7% | (many diffs) |
| 8 | human | 55778 | ZNF839 | zinc finger protein 839 | NM_001267828.1 | 16.3% | .7% | (many diffs) |
| 9 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_011536948.2 | 16.3% | .7% | (many diffs) |
| 10 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_006720203.3 | 15.8% | .7% | (many diffs) |
| 11 | human | 55778 | ZNF839 | zinc finger protein 839 | NM_018335.5 | 14.3% | .6% | (many diffs) |
| 12 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_017021447.2 | 14.1% | .6% | (many diffs) |
| 13 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_011536945.1 | 13.8% | .6% | (many diffs) |
| 14 | human | 55778 | ZNF839 | zinc finger protein 839 | XM_011536946.3 | 13.6% | .6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 132
- ORF length:
- 66
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TAAGAAATGT GCCAAGATTA CCTCAGTAGT TCTGGTCTGT GTTCCCAGGA 121 GACCCTGGAA ATAAACAATG ATAAGGTTGC TGAGTCATTA GGAATCACAG AATTCCTACG 181 GAAGAAAGAA ATACACCCAG ACAACCTTGG ACCCAAGCAC CTCAGCCGAG ACATGGATGG 241 GGAGCAGCTA GAGGGAGCTA GCAGCGAGAA GAGGGAACGT GAGGCTGCGG AGGAGGGACT 301 GGCCTCAGTG AAAAGGCCCA GAAGAGAAGC CCTGTCCAAC GATACCACTG AATCTCTTGC 361 TGCCAACAGC AGAGGCCGGG AGAAGCCCAG GCCCTTGCAT GCTTTGGCCG CTGGTACAAT 421 AGTGTCTCAG GAGGAGGACA TTGTCACAGT GACTGATGCA GAGGGGCGTG CCTGCGATGG 481 GCCCGCTACC CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt 541 tgttgcaacg aac