Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15236
- Subject:
- NM_001012753.2
- Aligned Length:
- 1803
- Identities:
- 1053
- Gaps:
- 630
Alignment
Query 1 ---AT------GGACCCAGTGGCTTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGA 65
|| ||||||.|||||.|.|.|||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGTTTCAGGACCCTGTGGCCTGTGAGGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGA 74
Query 66 TATTTCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGT 139
||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.||||.||
Sbjct 75 TATTTCGCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGGGAAAAAGT 148
Query 140 GGAAAGACCAGAACATTGAATATGAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAAGTC 213
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||..||.|||
Sbjct 149 GGAAAGACCAGAACATTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGGGAATGTC 222
Query 214 AATGAAATTAAAGATGACAGTCATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACTTCCAGGA 287
||||||||||||||.||||||||||||||||||||||||||||..||||||||||||||.||||||||||||||
Sbjct 223 AATGAAATTAAAGAAGACAGTCATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAACTTCCAGGA 296
Query 288 GAAGAAAGCTTCTCCTGAAGTAAAATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTT 361
||||||||||||||||||||.||||||||||||.|.||||||.|||||||||||||||.|||||||||||||||
Sbjct 297 GAAGAAAGCTTCTCCTGAAGCAAAATCATGTGATAACTTTGTATGTGGAGAAGTTGGCATAGGTAACTCATCTT 370
Query 362 TTAATATGAACATCAGAGGTGACATTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATGTAAG 435
||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||||.|||||||||||.||||
Sbjct 371 TTAATATGAACATCAGAGGTGACATTGGGCACAAGGCATACGAGTATCAGGACTATGCACCAAAGCCATATAAG 444
Query 436 TGTCAACAACCTAAAAAAGCCTTCAGATACCGCCCCTCCTTTAGAACACAAGAAAGGGATCACACTGGAGAGAA 509
||||||||||||||.||||||||||||||.|.|||||||||||||||||||||||||.|||||||.||||||||
Sbjct 445 TGTCAACAACCTAAGAAAGCCTTCAGATATCACCCCTCCTTTAGAACACAAGAAAGGAATCACACCGGAGAGAA 518
Query 510 ACCCAATGCTTGTAAAGTATGTGGAAAAACCTTTATTTCCCATTCAAGTGTTCGAAGACACATGGTAATGCACA 583
||||.||||||||||||.||||||||||||||||||||||||||||.|..|||||||||.||||||||||||||
Sbjct 519 ACCCTATGCTTGTAAAGAATGTGGAAAAACCTTTATTTCCCATTCAGGCATTCGAAGACGCATGGTAATGCACA 592
Query 584 GTGGGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGATTATATCTTATCCATGAA 657
||||||||||||||||||||||||||||||||||||||||..||||||||||||||||||||||||||||||||
Sbjct 593 GTGGGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCTGTCCATTGTCTCAGATTATATCTTATCCATGAA 666
Query 658 AGAATTCACACTGGAGAGAAACCATGTGAATGTAAACAGTGTGGTAAATCCTTTAGTTATTCTGCTACCCATCG 731
||||.||||||||||||||||||.|.||||||||||||.||||.||||||||||||||||||||||||||||||
Sbjct 667 AGAACTCACACTGGAGAGAAACCGTATGAATGTAAACAATGTGTTAAATCCTTTAGTTATTCTGCTACCCATCG 740
Query 732 AATACATAAAAGAACTCACACTGGAGAAAAGCCTTATGAATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCA 805
|||||||.|||||||||||||||||||||||||||||||||.||||.|.||||||||||||||.||||||.|||
Sbjct 741 AATACATGAAAGAACTCACACTGGAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTCCATAGTTCCA 814
Query 806 GATCCTATCGTAGACATGAAAGGATTCACATGGGAGAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTC 879
|.||.|.|| ||||
Sbjct 815 GTTCTTTTC---------------------------------------------------------AAGC---- 827
Query 880 ACGTGTCCCCGTTATGTTCGTATACATGAAAGGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGG 953
||||.||||.||||||.||.||..|||.|..|||||||||||.||.|||||
Sbjct 828 -----------------------ACATAAAAGAACCCACACTGGGGGAAAGCCATATGAATGTAAACAATGTGG 878
Query 954 GAAAGCATTATCCTCTCTTACAAGTTTTCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTA 1027
.|| ||||| || ||| ||| |||
Sbjct 879 CAA------ATCCT-TC-----AGT--------------------------TGG----------------TGT- 897
Query 1028 AGATATGTGGAAAAGACTTTTGTTCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCC 1101
.||||.|||||||.||||||||.||.|||||.|||.|||||.|||
Sbjct 898 -----------------------------CATTCCTTTCAAATACATGAAAGAACTCACACTGGGGAGAAGCCC 942
Query 1102 TATAAATGTAAGC-AGTGTGGTAAAGCCTTCCCTCATTCCAGTTCC---CTTCGATATCATGAAAGGACTCACA 1171
|.|.||||| ||| |.|||..||||||.||||.|..||.|||.||| |||.|| |||.||||||.|||||
Sbjct 943 TGTGAATGT-AGCAAATGTAATAAAGCATTCCGTAGTTACAGATCCTATCTTAGA---CATAAAAGGAGTCACA 1012
Query 1172 CTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCC---TCACACCTTCG-AGTGCA 1241
|.||||||||.||.|||.|.||||||.|||||.|.|||||.||||..|.|.|| || |||||| || .||
Sbjct 1013 CGGGAGAGAAGCCTTATCAATGTAAGGAATGTAGAAAAGCATTCACGTATCCCAGTTC---CCTTCGTAG-ACA 1082
Query 1242 TGGTAGGACTCACACTG-GAGAGAAACCGTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAAC 1314
||..|||||.|||.||| || |.|||||.||||||||||||.|.||||||||||| ||.|.
Sbjct 1083 TGAAAGGACCCACTCTGCGA-AAAAACCTTATGAATGTAAGCAGTGTGGGAAAGC--------------ATTAT 1141
Query 1315 CTTCAAAGTCATGAAAGGACACAAACACACATAAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATG 1388
|||..||||..| |||||||||.|||||||.|.||||||||||||||.|||
Sbjct 1142 CTTATAAGTTTT---------CAAACACACCTAAGAATGCGCTCTGGAGAAAGACCTTA--------------- 1191
Query 1389 TGGGAAAGGCTTTTATTGTCCCAAATCATTTCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAAT 1462
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 1463 GCAAGCAACGTTCAGTAGTTCCTTCAGTAGTTCCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGA 1536
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 1537 AGCCCTATAAATGCGAGCAATGTGGGAAAGCCTTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCAC 1610
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 1611 CCTGAAGAGAAACCCTATGAGTGTGAGCAATGACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATACGTGG 1684
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 1685 TAGGACACACAATGGAGAGAAGCCCTATGCATGTAAGGAATGTGGGAAACCCTTCGGATCTGCCCATAACCTTC 1758
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 1759 AAAGTCATGAAAGGACACAAACACACA 1785
Sbjct 1192 --------------------------- 1191
