Construct: sgRNA BRDN0001145468

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
ATTCAGCATTTCGGACTCTG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
LRGUK (136332)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
78084

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000007.14 7 134127642 - LRGUK NNNCAGCATTTCGGACTCTG NGG 0 1.0 Tier I
2 NC_000004.12 4 13484141 - RAB28 NNNCACCATGTCGGACTCTG NGG 2 0.3409 Tier I
3 NC_000004.12 4 5689214 - EVC2 NNNCACCATTTGGGACTCTG NGG 2 0.303 Tier I
4 NC_000014.9 14 79195652 - NRXN3 NNNCAGAATTTCAGACTCTG NGG 2 0.6923 Tier II
5 NC_000008.11 8 23161305 - TNFRSF10D NNNCAGAATCTCGGACTCTG NGG 2 0.4 Tier II
6 NC_000014.9 14 100299637 - SLC25A29 NNNCAGCATTTAGGACTCTG NAG 2 0.1852 Tier II
7 NC_000020.11 20 9542221 - PAK5 NNNCAGCTTTTCTGACTCTG NGG 2 0.1286 Tier II
8 NC_000002.12 2 177251407 - NFE2L2 NNNCAGCATTTCTTACTCTG NGG 2 0.08 Tier II
9 NC_000004.12 4 6403284 - PPP2R2C NNNCAGCATTTCTGTCTCTG NGG 2 0.06 Tier II
10 NC_000001.11 1 178369478 - RASAL2 NNNCAGCATTTCGGAGGCTG NGG 2 0.0181 Tier II
11 NC_000003.12 3 121231917 + STXBP5L NNNCAGCATTTTGGACTCTG NGT 2 0.0087 Tier II
12 NC_000014.9 14 79195652 - LOC124903352 NNNCAGAATTTCAGACTCTG NGG 2 0.6923 Tier III
13 NC_000007.14 7 119494090 - LOC124901816 NNNCAGCATTTTGGAATCTG NGG 2 0.5385 Tier III
14 NC_000022.11 22 26715726 - MIATNB NNNCAGCATTTTGGACTCTA NGG 2 0.5048 Tier III
15 NC_000006.12 6 118453193 + LOC644303 NNNCAGCATTTAGGACTTTG NGG 2 0.4592 Tier III
16 NC_000007.14 7 9979598 + LOC105375146 NNNCAGCTTTCCGGACTCTG NGG 2 0.2857 Tier III
17 NC_000005.10 5 165240747 - LINC01938 NNNCAGCTTTTCTGACTCTG NGG 2 0.1286 Tier III
18 NC_000007.14 7 23026714 - LOC105375185 NNNCAGCATTTCTGACTCTG NAG 2 0.0778 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000076.6 10 68541752 - Cabcoco1 NNNCAGCACTTCTGACTCTG NGG 2 0.2769 Tier I
2 NC_000080.6 14 54696907 + Gm29776 NNNCAGCATTTTGGACTCCG NGG 2 0.1485 Tier I
3 NC_000084.6 18 31814178 - Wdr33 NNNCAGCACTTAGGACTCTG NGG 2 0.6593 Tier II
4 NC_000077.6 11 103381843 + Plekhm1 NNNCAGCACTTCGGGCTCTG NGG 2 0.6 Tier II
5 NC_000067.6 1 127419249 - Mgat5 NNNTAGCATTACGGACTCTG NGG 2 0.6 Tier II
6 NC_000068.7 2 90500634 - Ptprj NNNCAGCATATTGGACTCTG NGG 2 0.4615 Tier II
7 NC_000078.6 12 73152393 - Mnat1 NNNCAGCATTTGGGAATCTG NGG 2 0.4444 Tier II
8 NC_000086.7 X 140415517 + Frmpd3 NNNCAGCATTTGGGAATCTG NGG 2 0.4444 Tier II
9 NC_000077.6 11 44704053 - Ebf1 NNNCAGCATTTGGGACTCTG NGG 1 0.4444 Tier II
10 NC_000077.6 11 105264816 - Tlk2 NNNCAGCATTTAGGACACTG NGG 2 0.381 Tier II
11 NC_000069.6 3 9606118 + Zfp704 NNNCAGCATCTCGGACCCTG NGG 2 0.3765 Tier II
12 NC_000067.6 1 182626353 + Capn8 NNNCAGCATTTAGCACTCTG NGG 2 0.3061 Tier II
13 NC_000075.6 9 108793543 + Ip6k2 NNNCAGCATTTCAGATTCTG NGG 2 0.284 Tier II
14 NC_000068.7 2 69865731 - Ssb NNNCTGCATTTAGGACTCTG NGG 2 0.2597 Tier II
15 NC_000081.6 15 89047380 + Mov10l1 NNNCAGCATTTGGGACACTG NGG 2 0.237 Tier II
16 NC_000075.6 9 121433609 + Trak1 NNNCAGGATTTGGGACTCTG NGG 2 0.2092 Tier II
17 NC_000081.6 15 81156309 - Mrtfa NNNCAGCATTTCGGAGTCTG NGG 1 0.1538 Tier II
18 NC_000069.6 3 121167148 - Rwdd3 NNNCAGCATTTGGGACTCAG NGG 2 0.127 Tier II
19 NC_000081.6 15 72878151 + Trappc9 NNNCAGCTTTTCGGCCTCTG NGG 2 0.1169 Tier II
20 NC_000082.6 16 41629660 + Lsamp NNNCAGCATTTCGGAGTTTG NGG 2 0.0989 Tier II
21 NC_000071.6 5 65938576 + Chrna9 NNNCAGCATTTCGGAGACTG NGG 2 0.0821 Tier II
22 NC_000071.6 5 63924303 - Rell1 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
23 NC_000074.6 8 84368297 + Cacna1a NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
24 NC_000076.6 10 59773099 + Micu1 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
25 NC_000078.6 12 83035930 + Rgs6 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
26 NC_000082.6 16 38757321 + B4galt4 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
27 NC_000084.6 18 35493223 - Sil1 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
28 NC_000084.6 18 36388051 + Cystm1 NNNCAGCATTTGGGAGTCTG NGG 2 0.0684 Tier II
29 NC_000082.6 16 44329482 + Sidt1 NNNCAGCATTTGGGACTGTG NGG 2 0.0593 Tier II
30 NC_000070.6 4 116015861 + Faah NNNCAGCATTTCGGACGCAG NGG 2 0.0336 Tier II
31 NC_000068.7 2 105005300 - Eif3m NNNCAGCATTTCGGAGGCTG NGG 2 0.0181 Tier II
32 NC_000076.6 10 86896308 - Stab2 NNNCAGCATTTCGGAGGCTG NGG 2 0.0181 Tier II
33 NC_000074.6 8 125665416 + Gm30871 NNNCAGCATTTAGGACTCTG NGG 1 0.7143 Tier III
34 NC_000067.6 1 127419249 - Gm51746 NNNTAGCATTACGGACTCTG NGG 2 0.6 Tier III
35 NC_000070.6 4 48926964 - Gm12436 NNNCAGCATTTTGGACTCTG NGG 1 0.5385 Tier III
36 NC_000084.6 18 5535140 - Gm10125 NNNCAGCTTTTCTGACTCTG NGG 2 0.1286 Tier III
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Other clones with same target sequence:

(none)