Construct: sgRNA BRDN0001145640

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GCCATGGAGTACTGCCAAGG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
IKBKB (3551)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76088

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000008.11 8 42290255 + IKBKB NNNATGGAGTACTGCCAAGG NGG 0 1.0 Tier I
2 NC_000004.12 4 90387714 - CCSER1 NNNATGGAGTACTGCCAAAA NGG 2 0.6696 Tier II
3 NC_000005.10 5 65788025 + NLN NNNATTGAGTACTGCAAAGG NGG 2 0.6667 Tier II
4 NC_000019.10 19 50426445 + SPIB NNNATGTAGAACTGCCAAGG NGG 2 0.4898 Tier II
5 NC_000014.9 14 85532873 - FLRT2 NNNATGGTGTACTGCCAAGA NGG 2 0.4018 Tier II
6 NC_000023.11 X 150444673 + MAMLD1 NNNATGCTGTACTGCCAAGG NGG 2 0.2946 Tier II
7 NC_000002.12 2 221479932 - EPHA4 NNNATGTAGTCCTGCCAAGG NGG 2 0.2286 Tier II
8 NC_000001.11 1 7693754 + CAMTA1 NNNATGGAGTACTGCCAACC NGG 2 0.1921 Tier II
9 NC_000001.11 1 165546009 + LRRC52 NNNATGAAGTACTGCCCAGG NGG 2 0.1765 Tier II
10 NC_000002.12 2 63897792 - VPS54 NNNAAGGAGTACTGCTAAGG NGG 2 0.1538 Tier II
11 NC_000003.12 3 9185151 - SRGAP3 NNNATGGAATACTGCCAAGG NGA 2 0.0446 Tier II
12 NC_000010.11 10 62388292 + ZNF365 NNNATGGAGTACTGCCTAGG NTG 2 0.0052 Tier II
13 NC_000008.11 8 52767931 - LOC105375835 NNNATGGAGTACAGCCAGGG NGG 2 0.2769 Tier III
14 NC_000001.11 1 7693754 + LOC105376689 NNNATGGAGTACTGCCAACC NGG 2 0.1921 Tier III
15 NC_000001.11 1 165546009 + LRRC52-AS1 NNNATGAAGTACTGCCCAGG NGG 2 0.1765 Tier III
16 NC_000012.12 12 30253500 - LINC02386 NNNATGGAGTACTGCCAATG NAG 2 0.1728 Tier III
17 NC_000001.11 1 58894255 - JUN-DT NNNATGGAGTACTGGCAAGG NAG 2 0.013 Tier III
18 NC_000001.11 1 58894255 - LINC02777 NNNATGGAGTACTGGCAAGG NAG 2 0.013 Tier III
19 NC_000002.12 2 96226062 - STARD7-AS1 NNNATGGAGTACTGGCAAGG NTG 2 0.0019 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000074.6 8 22693834 - Ikbkb NNNATGGAGTACTGCCAAGG NGG 0 1.0 Tier I
2 NC_000068.7 2 129810552 + Stk35 NNNATGGAGTACTGTGAAGG NGG 2 0.0103 Tier I
3 NC_000078.6 12 81032442 + Smoc1 NNNATGGAGAACTGCCATGG NGG 2 0.4286 Tier II
4 NC_000068.7 2 127647949 + Mal NNNATGGGTTACTGCCAAGG NGG 2 0.3911 Tier II
5 NC_000073.6 7 6725564 - Peg3 NNNTTGGAGTATTGCCAAGG NGG 2 0.3427 Tier II
6 NC_000070.6 4 152220869 + Acot7 NNNAGGGAGCACTGCCAAGG NGG 2 0.3413 Tier II
7 NC_000070.6 4 152220892 + Acot7 NNNAGGGAGCACTGCCAAGG NGG 2 0.3413 Tier II
8 NC_000086.7 X 57095771 + Vgll1 NNNCTTGAGTACTGCCAAGG NGG 2 0.2353 Tier II
9 NC_000068.7 2 113410106 + Fmn1 NNNATGGAGTGCTGCCAAGG NAG 2 0.1685 Tier II
10 NC_000078.6 12 75092102 - Kcnh5 NNNATGGAGTCCTGCCAAGG NAG 2 0.1037 Tier II
11 NC_000068.7 2 103581620 - Abtb2 NNNATGGAGTACTGGAAAGG NGG 2 0.05 Tier II
12 NC_000081.6 15 75781972 + Zc3h3 NNNATGGAGTACTGTCCAGG NGG 2 0.0118 Tier II
13 NC_000076.6 10 43891211 - Qrsl1 NNNATGGAGTACTGACAAGG NTG 2 0.0087 Tier II
14 NC_000068.7 2 114973865 - Gm13974 NNNATGAGGTACTGCCAAGG NGG 2 0.7333 Tier III
15 NC_000068.7 2 103581620 - 8030431J09Rik NNNATGGAGTACTGGAAAGG NGG 2 0.05 Tier III
16 NC_000070.6 4 89354125 + Gm12610 NNNATGGAGTACTGCGTAGG NGG 2 0.0205 Tier III
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Other clones with same target sequence:

(none)