Construct: sgRNA BRDN0001145742
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CAGTAGACCGAGTTCCTATG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- PHKA2 (5256)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77843
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000023.11 |
X |
18931704 |
- |
PHKA2 |
NNNTAGACCGAGTTCCTATG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000009.12 |
9 |
93637670 |
- |
PHF2 |
NNNTAGACAGAGTACCTATG |
NGG |
2 |
0.5306 |
Tier II |
| 3 |
NC_000010.11 |
10 |
119726883 |
- |
INPP5F |
NNNTAAACCGAGTGCCTATG |
NGG |
2 |
0.0 |
Tier II |
| 4 |
NC_000011.10 |
11 |
27212937 |
+ |
BBOX1-AS1 |
NNNTTGACCGAGTTCATATG |
NGG |
2 |
0.3636 |
Tier III |
| 5 |
NC_000012.12 |
12 |
115301147 |
- |
LOC124903082 |
NNNTAGACAGAGTTCCTAGG |
NGG |
2 |
0.2143 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000079.6 |
13 |
69504709 |
- |
Tent4a |
NNNTGGACGGAGTTCCTATG |
NGG |
2 |
0.4457 |
Tier I |
| 2 |
NC_000067.6 |
1 |
124619418 |
+ |
Dpp10 |
NNNTAGACCGAGTTTCTATG |
NGT |
2 |
0.0011 |
Tier II |
Other clones with same target sequence:
(none)
