Construct: sgRNA BRDN0001146467
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CCAGTGCCCTTTTGTCGCAA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- NO_SITE control
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 80234
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000008.11 |
8 |
139820676 |
- |
TRAPPC9 |
NNNATGCCCTTTTGTCGTAA |
NGG |
2 |
0.5786 |
Tier II |
| 2 |
NC_000013.11 |
13 |
20772372 |
+ |
EEF1AKMT1 |
NNNGAGCCCTTTTGTCGCTA |
NGG |
2 |
0.2692 |
Tier II |
| 3 |
NC_000007.14 |
7 |
141323005 |
+ |
TMEM178B |
NNNGTGCCCTTTTGTTGTAA |
NGG |
2 |
0.1978 |
Tier II |
| 4 |
NC_000005.10 |
5 |
178472332 |
+ |
COL23A1 |
NNNGTGCACTTTTGTCCCAA |
NGG |
2 |
0.1529 |
Tier II |
| 5 |
NC_000005.10 |
5 |
178472332 |
+ |
LOC124901148 |
NNNGTGCACTTTTGTCCCAA |
NGG |
2 |
0.1529 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000068.7 |
2 |
136726655 |
- |
Snap25 |
NNNGTGCCCTTTTGGCTCAA |
NGG |
2 |
0.0125 |
Tier II |
Other clones with same target sequence:
(none)
