Construct: sgRNA BRDN0001147433
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- AGTCATGGAATACGCGAGTG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- MARK1 (4139)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77794
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
220599858 |
+ |
MARK1 |
NNNCATGGAATACGCGAGTG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000001.11 |
1 |
115651161 |
- |
VANGL1 |
NNNCATGGAACAAGCGAGTG |
NGG |
2 |
0.2564 |
Tier II |
| 3 |
NC_000017.11 |
17 |
79137725 |
+ |
RBFOX3 |
NNNCATGGAAGAGGCGAGTG |
NGG |
2 |
0.0545 |
Tier II |
| 4 |
NC_000004.12 |
4 |
16776783 |
+ |
LDB2 |
NNNCATGAAATACGGGAGTG |
NGG |
2 |
0.05 |
Tier II |
| 5 |
NC_000012.12 |
12 |
122848774 |
- |
HIP1R |
NNNCAGGGAATACGGGAGTG |
NGG |
2 |
0.0286 |
Tier II |
| 6 |
NC_000012.12 |
12 |
53745527 |
+ |
LOC105378250 |
NNNCATGGAATACGTGTGTG |
NGG |
2 |
0.0089 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000067.6 |
1 |
184928040 |
- |
Mark1 |
NNNCATGGAATACGCAAGTG |
NGG |
1 |
1.0 |
Tier I |
| 2 |
NC_000073.6 |
7 |
45881800 |
- |
Kdelr1 |
NNNCATGGAATACAGGAGTG |
NGG |
2 |
0.0375 |
Tier II |
Other clones with same target sequence:
(none)
