Construct: sgRNA BRDN0001148200

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
TATGCTAACAGACTTACAGT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
DLG1 (1739)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76617

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000003.12 3 197130527 + DLG1 NNNGCTAACAGACTTACAGT NGG 0 1.0 Tier I
2 NC_000022.11 22 35984588 + RBFOX2 NNNGCTAAAAGACTTACAGA NGG 2 0.4821 Tier II
3 NC_000023.11 X 74851522 + NEXMIF NNNCCTAACAGACTAACAGT NGG 2 0.3065 Tier II
4 NC_000017.11 17 33509517 + ASIC2 NNNGCTAACAGACTGACAGA NGG 2 0.0281 Tier II
5 NC_000023.11 X 74487445 + SLC16A2 NNNGCAAACAGACTTACAGT NGC 2 0.0193 Tier II
6 NC_000013.11 13 66884633 + PCDH9 NNNGCTAACATACTGACAGT NGG 2 0.0192 Tier II
7 NC_000001.11 1 60032915 + C1orf87 NNNGCTAACAGAGTTACAGT NGT 2 0.0022 Tier II
8 NC_000021.9 21 31190022 - TIAM1 NNNGCTAACAGCCTTCCAGT NGG 2 0.0 Tier II
9 NC_000013.11 13 66884633 + PCDH9-AS2 NNNGCTAACATACTGACAGT NGG 2 0.0192 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000081.6 15 97987293 + Col2a1 NNNGCTAATAGACTTACAGA NGG 2 0.4922 Tier I
2 NC_000076.6 10 69867762 - Ank3 NNNGCTAACAGACTTACAGA NGG 1 0.5625 Tier II
3 NC_000082.6 16 94895674 + Kcnj6 NNNGATAACAGACTTACAGA NGG 2 0.3214 Tier II
4 NC_000080.6 14 9604801 + Fhit NNNGCTGACAGACTTACACT NGG 2 0.3164 Tier II
5 NC_000070.6 4 141959862 + Fhad1 NNNTGTAACAGACTTACAGT NGG 2 0.2182 Tier II
6 NC_000067.6 1 39952490 + Map4k4 NNNGCTCACAGACTTATAGT NGG 2 0.2042 Tier II
7 NC_000075.6 9 10132149 - Cntn5 NNNGCTAACACACTCACAGT NGG 2 0.1169 Tier II
8 NC_000077.6 11 21892551 - Wdpcp NNNGCTAACAGACTCACAGT NAG 2 0.0707 Tier II
9 NC_000068.7 2 41411234 + Lrp1b NNNGCTAACAGAATTACAGG NGG 2 0.0679 Tier II
10 NC_000070.6 4 3998552 + Sdr16c5 NNNGCTAACAGAATTACAGG NGG 2 0.0679 Tier II
11 NC_000068.7 2 158521041 + Arhgap40 NNNGCTCACAGAGTTACAGT NGG 2 0.0597 Tier II
12 NC_000067.6 1 72357042 + Xrcc5 NNNGCTTACAGAGTTACAGT NGG 2 0.0597 Tier II
13 NC_000068.7 2 14946302 + Cacnb2 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier II
14 NC_000074.6 8 69059832 - Slc18a1 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier II
15 NC_000083.6 17 68407380 + L3mbtl4 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier II
16 NC_000083.6 17 68622108 - L3mbtl4 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier II
17 NC_000086.7 X 83251239 - Dmd NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier II
18 NC_000071.6 5 27090067 + Dpp6 NNNGCTAACAGACTGGCAGT NGG 2 0.0096 Tier II
19 NC_000074.6 8 68902847 - Lpl NNNGCTAACAGACTTGCAGT NGT 2 0.0031 Tier II
20 NC_000070.6 4 108050092 + Scp2 NNNGCTAACAGACTGAGAGT NGG 2 0.0029 Tier II
21 NC_000073.6 7 97010692 + Nars2 NNNGCTAACAGACTTACAGC NGT 2 0.0015 Tier II
22 NC_000077.6 11 57516581 - Fam114a2 NNNGCTAACAGACTTCCAGT NTG 2 0.0 Tier II
23 NC_000072.6 6 90168363 + Gm20426 NNNGCTAACAGACTCACAGA NGG 2 0.1534 Tier III
24 NC_000071.6 5 8784296 + Gm5106 NNNGCTAACAGAATCACAGT NGG 2 0.1049 Tier III
25 NC_000074.6 8 52772318 - Gm9685 NNNGCTAACAGAATCACAGT NGG 2 0.1049 Tier III
26 NC_000072.6 6 69321395 - Igk NNNGCTTACAGACTTACAGG NGG 2 0.0772 Tier III
27 NC_000073.6 7 17276952 - Gm42373 NNNGCTAACAGAATTACAGG NGG 2 0.0679 Tier III
28 NC_000073.6 7 75069882 - 4930533N22Rik NNNGCTAACAGAATTACAGG NGG 2 0.0679 Tier III
29 NC_000068.7 2 78822475 - Gm39865 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
30 NC_000070.6 4 118945125 + Gm12865 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
31 NC_000072.6 6 60123154 - Gm5570 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
32 NC_000072.6 6 141882803 + Gm30843 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
33 NC_000074.6 8 39900051 + Gm36795 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
34 NC_000075.6 9 51051166 - Gm32681 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
35 NC_000078.6 12 34960969 - Gm33864 NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
36 NC_000082.6 16 98063947 - A630089N07Rik NNNGCTAACAGACTCACAGG NGG 2 0.0481 Tier III
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Other clones with same target sequence:

(none)