Construct: shRNA TRCN0000094289

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_033592.2-3979s1c1
DNA Barcode:
CCAATGGATTTAAGCTGACAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Pcdhga9 (93717)
Gene Description:
protocadherin gamma subfamily A, 9
Transcript:
RefSeq NM_033592.2 (NON-CURRENT)
Match location:
Position 3979 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000094289)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAATGGATTTAAGCTGACAT
Hairpin Sequence:
5'-CCGG-CCAATGGATTTAAGCTGACAT-CTCGAG-ATGTCAGCTTAAATCCATTGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAATGGATTTAAGCTGACATCTCGAGATGTCAGCTTAAATCCATTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAATGGATTTAAGCTGACATCTCGAGATGTCAGCTTAAATCCATTGG-3'

Other clones with same target sequence:

(none)