Construct: shRNA TRCN0000116957
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_001848.1-3995s1c1
- DNA Barcode:
- GCTGTGTCTTACTAGAAACAA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- COL6A1 (1291)
- Gene Description:
- collagen type VI alpha 1 chain
- Transcript:
- RefSeq NM_001848.1 (NON-CURRENT)
- Match location:
- Position 3995 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000116957)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- GCTGTGTCTTACTAGAAACAA
- Hairpin Sequence:
-
5'-CCGG-GCTGTGTCTTACTAGAAACAA-CTCGAG-TTGTTTCTAGTAAGACACAGC-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGGCTGTGTCTTACTAGAAACAACTCGAGTTGTTTCTAGTAAGACACAGCTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAAGCTGTGTCTTACTAGAAACAACTCGAGTTGTTTCTAGTAAGACACAGC-3'
Other clones with same target sequence:
-
TRCN0000300353
