Construct: shRNA TRCN0000140514

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_199132.1-1140s1c1
DNA Barcode:
GCGCTTCATACTGGAGAGAAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
ZNF468 (90333)
Gene Description:
zinc finger protein 468
Transcript:
RefSeq NM_199132.1 (NON-CURRENT)
Match location:
Position 1140 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000140514)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 human 90333 ZNF468 zinc finger protein 468 NM_001008801.2 100% CDS 992 4.950 2.970
2 human 90333 ZNF468 zinc finger protein 468 NM_001277120.2 100% 3UTR 1110 4.950 2.970
3 human 90333 ZNF468 zinc finger protein 468 NR_102299.2 100% 3UTR 1365 4.950 2.970
4 human 90333 ZNF468 zinc finger protein 468 NR_102300.2 100% 3UTR 1346 4.950 2.970
5 human 90333 ZNF468 zinc finger protein 468 NR_102301.2 100% 3UTR 1247 4.950 2.970
6 human 90333 ZNF468 zinc finger protein 468 XM_017027443.1 100% CDS 1237 4.950 2.970
7 human 90333 ZNF468 zinc finger protein 468 XM_017027444.1 100% CDS 1355 4.950 2.970
8 human 7730 ZNF177 zinc finger protein 177 NM_003451.3 85% CDS 1144
9 human 10664 CTCF CCCTC-binding factor NM_001191022.2 85% CDS 474
10 human 10664 CTCF CCCTC-binding factor NM_001363916.1 85% CDS 1304
11 human 10664 CTCF CCCTC-binding factor NM_006565.4 85% CDS 1435
12 human 10664 CTCF CCCTC-binding factor XM_005255775.4 85% CDS 1435
13 human 10664 CTCF CCCTC-binding factor XM_017022868.1 85% CDS 1304
14 human 55762 ZNF701 zinc finger protein 701 NM_001172655.1 89% CDS 1291
15 human 55762 ZNF701 zinc finger protein 701 NM_018260.2 89% CDS 997
16 human 55762 ZNF701 zinc finger protein 701 XM_011527092.1 89% CDS 1071
17 human 55762 ZNF701 zinc finger protein 701 XR_001753715.2 89% 3UTR 985
18 human 55762 ZNF701 zinc finger protein 701 XR_001753716.2 89% 3UTR 985
19 human 55762 ZNF701 zinc finger protein 701 XR_001753717.2 89% 3UTR 985
20 human 55762 ZNF701 zinc finger protein 701 XR_001753718.2 89% 3UTR 985
21 human 79986 ZNF702P zinc finger protein 702, ps... NR_003578.1 89% 3UTR 1110
22 human 374900 ZNF568 zinc finger protein 568 NM_001204838.1 89% CDS 1347
23 human 374900 ZNF568 zinc finger protein 568 NM_001204839.1 89% CDS 1086
24 human 374900 ZNF568 zinc finger protein 568 XM_017026772.1 89% CDS 1935
25 human 374900 ZNF568 zinc finger protein 568 XM_017026775.2 89% CDS 964
26 human 374900 ZNF568 zinc finger protein 568 XM_017026776.1 89% CDS 1042
27 human 374900 ZNF568 zinc finger protein 568 XM_017026777.1 89% CDS 938
28 human 374900 ZNF568 zinc finger protein 568 XM_017026778.1 89% CDS 1083
29 human 399669 ZNF321P zinc finger protein 321, ps... NR_037805.1 89% 3UTR 868
30 human 147660 ZNF578 zinc finger protein 578 NM_001099694.2 89% CDS 1438
31 human 147660 ZNF578 zinc finger protein 578 NM_001366182.1 89% CDS 1396
32 human 91661 ZNF765 zinc finger protein 765 NM_001040185.3 89% CDS 1157
33 human 91661 ZNF765 zinc finger protein 765 NM_001350495.1 89% CDS 1046
34 human 91664 ZNF845 zinc finger protein 845 NM_001321522.1 89% CDS 1257
35 human 91664 ZNF845 zinc finger protein 845 NM_001321523.1 89% CDS 1196
36 human 91664 ZNF845 zinc finger protein 845 NM_001321524.1 89% CDS 1204
37 human 91664 ZNF845 zinc finger protein 845 NM_138374.3 89% CDS 1072
38 human 7576 ZNF28 zinc finger protein 28 NM_001369761.1 89% 3UTR 1110
39 human 7576 ZNF28 zinc finger protein 28 NM_001369762.1 89% CDS 865
40 human 7576 ZNF28 zinc finger protein 28 NM_001369763.1 89% CDS 983
41 human 7576 ZNF28 zinc finger protein 28 NM_001369764.1 89% CDS 950
42 human 7576 ZNF28 zinc finger protein 28 NM_001369765.1 89% CDS 1239
43 human 7576 ZNF28 zinc finger protein 28 NM_001369766.1 89% 3UTR 1068
44 human 7576 ZNF28 zinc finger protein 28 NM_006969.5 89% CDS 992
45 human 7576 ZNF28 zinc finger protein 28 NR_163139.1 89% 3UTR 1357
46 human 7576 ZNF28 zinc finger protein 28 XM_011527262.2 89% CDS 1058
47 human 7576 ZNF28 zinc finger protein 28 XM_024451686.1 89% CDS 1072
48 human 7576 ZNF28 zinc finger protein 28 XM_024451688.1 89% CDS 931
49 human 170958 ZNF525 zinc finger protein 525 NM_001348156.2 89% 3UTR 2501
50 human 170958 ZNF525 zinc finger protein 525 NM_001348157.2 89% 3UTR 2474
51 human 170958 ZNF525 zinc finger protein 525 NR_145445.2 89% 3UTR 2501
52 human 162967 ZNF320 zinc finger protein 320 NM_001351777.1 89% 3UTR 1760
53 human 162967 ZNF320 zinc finger protein 320 XM_024451396.1 89% CDS 915
54 human 162967 ZNF320 zinc finger protein 320 XM_024451397.1 89% CDS 622
55 human 126017 ZNF813 zinc finger protein 813 NM_001004301.4 89% CDS 1589
56 human 125893 ZNF816 zinc finger protein 816 NM_001031665.3 89% CDS 1402
57 human 125893 ZNF816 zinc finger protein 816 NM_001202456.2 89% CDS 1261
58 human 125893 ZNF816 zinc finger protein 816 NM_001202457.2 89% CDS 1251
59 human 344787 ZNF860 zinc finger protein 860 NM_001137674.3 89% CDS 1993
60 human 344787 ZNF860 zinc finger protein 860 XM_017006299.1 89% CDS 3052
61 human 388558 ZNF808 zinc finger protein 808 NM_001039886.4 89% CDS 1168
62 human 388558 ZNF808 zinc finger protein 808 NM_001321424.1 89% CDS 1325
63 human 388558 ZNF808 zinc finger protein 808 NM_001321425.1 89% CDS 1078
64 human 388558 ZNF808 zinc finger protein 808 NM_001363550.1 89% CDS 939
65 human 388558 ZNF808 zinc finger protein 808 XM_005258909.4 89% CDS 1082
66 human 388558 ZNF808 zinc finger protein 808 XM_024451506.1 89% CDS 1084
67 human 388558 ZNF808 zinc finger protein 808 XM_024451507.1 89% CDS 1041
68 human 388558 ZNF808 zinc finger protein 808 XM_024451508.1 89% CDS 1038
69 human 388558 ZNF808 zinc finger protein 808 XM_024451509.1 89% CDS 837
70 human 388558 ZNF808 zinc finger protein 808 XR_002958314.1 89% 3UTR 1146
71 human 388558 ZNF808 zinc finger protein 808 XR_935832.3 89% 3UTR 950
72 human 7652 ZNF99 zinc finger protein 99 NM_001080409.3 89% CDS 1048
73 human 730051 ZNF814 zinc finger protein 814 NM_001144989.2 95% CDS 2020
74 human 730051 ZNF814 zinc finger protein 814 XM_017027197.1 95% CDS 1702
75 human 100287226 ZNF729 zinc finger protein 729 NM_001242680.2 89% CDS 1523
76 human 100293516 ZNF587B zinc finger protein 587B NM_001204818.2 90% CDS 1265
77 human 100529215 ZNF559-ZNF177 ZNF559-ZNF177 readthrough NM_001172650.3 85% CDS 1472
78 human 100529240 ZNF816-ZNF321P ZNF816-ZNF321P readthrough NM_001202473.1 89% 3UTR 1214
79 mouse 13018 Ctcf CCCTC-binding factor NM_181322.3 85% CDS 1419
80 mouse 13018 Ctcf CCCTC-binding factor XM_006530644.2 85% CDS 1242
81 mouse 13018 Ctcf CCCTC-binding factor XM_006530645.3 85% CDS 1242
82 mouse 13018 Ctcf CCCTC-binding factor XM_006530646.3 85% CDS 1242
83 mouse 13018 Ctcf CCCTC-binding factor XM_006530647.2 85% CDS 1243
84 mouse 13018 Ctcf CCCTC-binding factor XM_006530648.2 85% CDS 1325
85 mouse 13018 Ctcf CCCTC-binding factor XM_017312557.1 85% CDS 1405
86 mouse 238692 Zfp874a zinc finger protein 874a NM_177712.4 89% CDS 744
87 mouse 238692 Zfp874a zinc finger protein 874a XM_006517246.3 89% CDS 697
88 mouse 380855 Rsl1 regulator of sex limited pr... NM_001013769.1 89% CDS 871
89 mouse 408067 Zfp874b zinc finger protein 874b NM_001076791.2 89% CDS 741
90 mouse 408067 Zfp874b zinc finger protein 874b XM_006517283.3 89% CDS 2741
91 mouse 408067 Zfp874b zinc finger protein 874b XM_011244535.2 89% CDS 2661
92 mouse 408067 Zfp874b zinc finger protein 874b XM_011244536.2 89% CDS 2649
93 mouse 668572 2610021A01Rik RIKEN cDNA 2610021A01 gene XR_001778101.1 89% 3UTR 1766
94 mouse 668572 2610021A01Rik RIKEN cDNA 2610021A01 gene XR_001778102.1 89% 3UTR 2310
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Sequence Information

Target Sequence:
GCGCTTCATACTGGAGAGAAA
Hairpin Sequence:
5'-CCGG-GCGCTTCATACTGGAGAGAAA-CTCGAG-TTTCTCTCCAGTATGAAGCGC-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCGCTTCATACTGGAGAGAAACTCGAGTTTCTCTCCAGTATGAAGCGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCGCTTCATACTGGAGAGAAACTCGAGTTTCTCTCCAGTATGAAGCGC-3'

Other clones with same target sequence:

(none)