Construct: ORF TRCN0000465207
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011770.1_s317c1
- Derived from:
- ccsbBroadEn_15770
- DNA Barcode:
- GTTTCATACTGTAAGCTGGCCCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LMOD1 (25802)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465207
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25802 | LMOD1 | leiomodin 1 | NM_012134.3 | 44.8% | 44.8% | 1_84del;669_1577del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 873
- ORF length:
- 807
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga ggagctggag aaggagctgg acgtggtgga cccagacggg agtgttcccg 121 tggggctgcg gcagagaaac cagacggaga aacagtccac gggtgtgtac aaccgggagg 181 ccatgctcaa cttctgtgaa aaggagacca agaaacttat gcagagggag atgtccatgg 241 atgaaagcaa gcaagtggag accaagacag atgccaagaa tggagaggaa aggggcagag 301 atgccagcaa aaaagccctg ggccccagac gggactcaga tctggggaag gagccaaaga 361 ggggtggttt aaagaaaagc ttctctagag acagagatga agctggtggc aagagtggcg 421 agaagcccaa ggaggagaag atcatccggg gcattgacaa gggccgggtc agggctgcag 481 tggataagaa ggaggcaggg aaggatggga gaggagagga gagggcagtg gccaccaaga 541 aggaagagga gaagaaaggg agtgacagga acacaggctt gagcagggac aaggataaaa 601 agagagagga gatgaaggag gtggccaaga aagaggatga tgagaaggta aaagggggtg 661 ctccagctgc cccaccaccc ccTCCCCCTC CCTTGGCTCC ACCCCTTATC ATGGAGAACC 721 TGAAGAATTC ACTCTCACCA GCTACCCAGA GGAAGATGGG AGACAAAGTC CTCCCTGCCC 781 AGGAGAAGAA CTCCCGTGAC CAGCTATTGG CTGCCATCCG CTCCAGCAAC CTCAAGCAGC 841 TCAAGAAGGT GGAAGTGCCC AAACTGCTTC AGTACCCAAC TTTCTTGTAC AAAGTGGTTG 901 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 961 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGT 1021 TTCATACTGT AAGCTGGCCC CGACGCGTTA AGTCgacaat caacctctgg attacaaaat 1081 ttgtgaaaga tt