Construct: ORF TRCN0000465486

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014283.1_s317c1
Derived from:
ccsbBroadEn_13475
DNA Barcode:
CTTCATACGAATATCCAGTACGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCML4 (256380)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465486
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 256380 SCML4 Scm polycomb group protein ... XM_011535707.2 87.6% 84.4% (many diffs)
2 human 256380 SCML4 Scm polycomb group protein ... XM_011535703.2 77.9% 76.8% (many diffs)
3 human 256380 SCML4 Scm polycomb group protein ... XM_011535704.2 77.9% 76.8% (many diffs)
4 human 256380 SCML4 Scm polycomb group protein ... XM_017010684.1 75% 71% (many diffs)
5 human 256380 SCML4 Scm polycomb group protein ... XM_017010686.1 72.1% 70.9% (many diffs)
6 human 256380 SCML4 Scm polycomb group protein ... NM_001286408.2 70.4% 69.3% (many diffs)
7 human 256380 SCML4 Scm polycomb group protein ... XM_011535706.1 70.4% 69.3% (many diffs)
8 human 256380 SCML4 Scm polycomb group protein ... XM_017010683.1 70.4% 69.3% (many diffs)
9 human 256380 SCML4 Scm polycomb group protein ... NM_198081.5 69.7% 66.1% (many diffs)
10 human 256380 SCML4 Scm polycomb group protein ... XM_017010678.1 69.7% 66.1% (many diffs)
11 human 256380 SCML4 Scm polycomb group protein ... XM_017010679.1 69.7% 66.1% (many diffs)
12 human 256380 SCML4 Scm polycomb group protein ... XM_017010680.1 69.7% 66.1% (many diffs)
13 human 256380 SCML4 Scm polycomb group protein ... XM_017010681.1 69.7% 66.1% (many diffs)
14 human 256380 SCML4 Scm polycomb group protein ... XM_017010682.2 69.7% 66.1% (many diffs)
15 human 256380 SCML4 Scm polycomb group protein ... XM_017010677.1 65.3% 62% (many diffs)
16 human 256380 SCML4 Scm polycomb group protein ... XM_017010687.1 61.4% 48% (many diffs)
17 human 256380 SCML4 Scm polycomb group protein ... XM_017010688.1 53.7% 49% (many diffs)
18 human 256380 SCML4 Scm polycomb group protein ... XR_001743305.1 51.5% (many diffs)
19 human 256380 SCML4 Scm polycomb group protein ... XM_017010685.1 50.4% 47% (many diffs)
20 human 256380 SCML4 Scm polycomb group protein ... NM_001286409.2 22.8% 21.5% (many diffs)
21 human 256380 SCML4 Scm polycomb group protein ... XM_011535709.2 22.8% 21.5% (many diffs)
22 human 256380 SCML4 Scm polycomb group protein ... XM_011535710.2 22.8% 21.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc ctgccagaga acagcttgga taggttgcga caggcagaga acccccccat
121tccactggag agagatcaag tctcgggttc tcatgactcc cttagccctc tcacctccgc
181ggagtacccc agagcccgac ctcagctcca tccctcagga cgcagccacg gtccccagct
241tggcggcccc acaggctctc acagtctgcc tctacatcaa caagcaggcc aatgcggggc
301cctatctgga gaggaagaag gtgcagcagc tcccggagca ttttgggccc gagcggccat
361cggcggtgct gcagcaggcc gtccaagcct gcatcgactg cgcccaccag cagaagctgg
421tcttctccct ggtcaagcag ggctatggtg gtgagatggt gtcagtctcg gcttcctttg
481atggcaaaca gcacctgcgg agcctgcctg tggtgaacag catcggctat gtcctccgct
541tcctcgccaa gctgtgccga agcctcctgt gcgatgacct cttcagccac cagcccttcc
601ccaggggctg cagtgccTCT GAGAAAGTCC AGGAGAAAGA GGAAGGGAGG ATGGAATCAG
661TCAAGACAGT CACCACCGAA GAGTACCTGG TGAACCCTGT GGGCATGAAC CGCTACAGCG
721TGGACACCTC CGCCTCCACC TTTAACCACA GGGGCTCCTT GCACCCCTCC TCCTCGCTGT
781ACTGCAAGAG GCAGAACTCT GGAGACAGCC ACCTTGGGGG TGGTCCTGCT GCCACCGCTG
841GTGGTCCCCG CACTAGCCCC ATGTCTTCTG GTGGCCCCTC GGCACCTGGG CTGAGGCCTC
901CAGCCTCCAG CCCCAAGAGA AACACGACCT CTCTTGAAGG AAACAGATGT GGTAATGTAA
961TGCATGCATC AGCTTCCCAC TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1021CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1081AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACTTC ATACGAATAT
1141CCAGTACGGA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)