Construct: ORF TRCN0000465494

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002666.1_s317c1
Derived from:
ccsbBroadEn_04452
DNA Barcode:
CAGACCACATTCCGAAGATTATTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAEL (84944)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465494
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84944 MAEL maelstrom spermatogenic tra... NM_032858.3 100% 100%
2 human 84944 MAEL maelstrom spermatogenic tra... XM_011510067.1 99.3% 99.3% 313_314insAAGGTGATC
3 human 84944 MAEL maelstrom spermatogenic tra... XM_006711583.1 96.3% 96.3% 0_1ins46;2delT
4 human 84944 MAEL maelstrom spermatogenic tra... NM_001286377.1 92.8% 92.8% 131_132ins93
5 human 84944 MAEL maelstrom spermatogenic tra... NM_001286378.1 87% 87% 0_1ins168
6 human 84944 MAEL maelstrom spermatogenic tra... XM_017002602.1 87% 87% 0_1ins168
7 human 84944 MAEL maelstrom spermatogenic tra... XM_017002603.1 87% 87% 0_1ins168
8 human 84944 MAEL maelstrom spermatogenic tra... XM_011510068.1 86.4% 86.4% 0_1ins168;145_146insAAGGTGATC
9 mouse 98558 Mael maelstrom spermatogenic tra... NM_175296.4 89.6% 89.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1368
ORF length:
1302
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc gaaccgtaag gccagccgga atgcttacta tttcttcgtg caggagaaga
121tccccgaact acggcgacga ggcctgcctg tggctcgcgt tgctgatgcc atcccttact
181gctcctcaga ctgggcgctt ctgagggagg aagaaaagga gaaatacgca gaaatggctc
241gagaatggag ggccgctcag ggaaaggacc ctgggccctc agagaagcag aaacctgttt
301tcacaccact gaggaggcca ggcatgcttg taccaaagca gaatgtttca cctccagata
361tgtcagcttt gtctttaaaa ggtgatcaag ctctccttgg aggcattttt tattttttga
421acatttttag ccatggcgag ctacctcctc attgtgaaca gcgcttcctc ccttgtgaaa
481ttggctgtgt taagtattct ctccaagaag gtattatggc agatttccac agttttataa
541atcctggtga aattccacga ggatttcgat ttcattgtca ggctgcaagt gattctagtc
601acaagattcc tatttcaaat tttgaacgtg ggcataacca agcaactgtg ttacaaaacc
661tttatagatt tattcatccc aacccaggga actggccacc tatctactgc aagtctgatg
721atagaaccag agtcaactgg tgtttgaagc atatggcaaa ggcatcagaa atcaggcaag
781atctacaact tctcactgta gaggaccttg tagtggggat ctaccaacaa aaatttctca
841aggagccctc taagacttgg attcgaagcc tcctagatgt ggccatgtgg gattattcta
901gcaacacaag gtgcaagtgg catgaagaaa atgatattct cttctgtgct ttagctgttT
961GCAAGAAGAT TGCGTACTGC ATCAGTAATT CTCTGGCCAC TCTCTTTGGA ATCCAGCTCA
1021CAGAGGCTCA TGTACCACTA CAAGATTATG AGGCCAGCAA TAGTGTGACA CCCAAAATGG
1081TTGTATTGGA TGCAGGGCGT TACCAGAAGC TAAGGGTTGG GAGTTCAGGA TTCTCTCATT
1141TCAACTCTTC TAATGAGGAA CAAAGATCAA ACACACCCAT TGGTGACTAC CCATCTAGGG
1201CAAAAATTTC TGGCCAAAAC AGCAGCGTTC GGGGAAGAGG AATTACCCGC TTACTAGAGA
1261GCATTTCCAA TTCTTCCAGC AATATCCACA AATTCTCCAA CTGTGACACT TCACTCTCAC
1321CTTACATGTC CCAAAAAGAT GGATACAAAT CTTTCTCTTC CTTATCTTAC CCAACTTTCT
1381TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1441CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1501GTGGAAAGGA CGACAGACCA CATTCCGAAG ATTATTAACG CGTTAAGTCg acaatcaacc
1561tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)