Construct: ORF TRCN0000465821

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014621.1_s317c1
Derived from:
ccsbBroadEn_09831
DNA Barcode:
ACCGACGCATGTGACATACGACTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CERS3 (204219)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465821
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 204219 CERS3 ceramide synthase 3 NM_001290342.2 99.8% 99.7% 159A>G;1108A>G
2 human 204219 CERS3 ceramide synthase 3 NM_001290343.2 99.8% 99.7% 159A>G;1108A>G
3 human 204219 CERS3 ceramide synthase 3 NM_178842.5 99.8% 99.7% 159A>G;1108A>G
4 human 204219 CERS3 ceramide synthase 3 XM_017022003.1 99.8% 99.7% 159A>G;1108A>G
5 human 204219 CERS3 ceramide synthase 3 XM_017022004.1 99.8% 99.7% 159A>G;1108A>G
6 human 204219 CERS3 ceramide synthase 3 NM_001290341.2 97% 96.9% 1_33del;192A>G;1141A>G
7 human 204219 CERS3 ceramide synthase 3 XM_011521355.2 97% 96.9% 1_33del;192A>G;1141A>G
8 human 204219 CERS3 ceramide synthase 3 XM_011521357.2 97% 96.9% 1_33del;192A>G;1141A>G
9 human 204219 CERS3 ceramide synthase 3 XM_011521358.1 97% 96.9% 1_33del;192A>G;1141A>G
10 human 204219 CERS3 ceramide synthase 3 XM_017022002.1 97% 96.9% 1_33del;192A>G;1141A>G
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1215
ORF length:
1149
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ttggacgttt aaagaatggt tctggttgga aagattctgg cttcctccaa
121caataaagtg gtcagatctt gaggatcacg atggactcgt ctttgtaaaa ccttctcatt
181tatacgtgac aattccatat gcttttctct tgctgattat caggcgtgta tttgaaaaat
241ttgttgcttc acctctagca aaatcatttg gcattaaaga gacagttcga aaggttacac
301caaatactgt cttagagaat tttttcaaac attccacaag gcaaccattg caaactgata
361tttatggact ggcaaagaag tgtaacttga cggagcgcca ggtggaaaga tggtttagga
421gtcggcggaa tcaagagagg ccttccaggc tgaagaaatt ccaggaagct tgctggagat
481ttgcatttta cttaatgatc actgttgctg gaattgcgtt tctttatgat aaaccttggc
541tatatgactt atgggaggtt tggaatggct atcccaaaca gcccctgctg ccatcccagt
601actggtacta cattttagaa atgagttttt attggtctct gttatttaga cttggctttg
661atgtcaagag aaaggatttt ctagctcata tcatccacca cctggctgct attagtctga
721tgagcttctc ttggtgtgct aattatattc gcagtgggac cctcgtgatg attgtacacg
781atgtggctga catttggctg gagtctgcta agatgttttc ttatgctgga tggacgcaga
841cctgtaacac cctgtttttc atcttctcca ccatattttt catcagccgc ctcattgttt
901ttcctttctg gattttatat tgcacgctga tcttgcctat gtatcacctc gagcctttct
961tttcatacat cttcctcaac ctacagctca tgatcttgca ggtccttcac ctttactggg
1021gttattacat cttgaagatg ctcaacagat gtatattcat gaagagcatc caggatgtga
1081ggagtgatga cgaggattat gaagaggaag aggaagagga agaagaagag gctaccaaag
1141gcaaagagat ggattgtttA AAGAACGGCC TCGGGGCTGA GAGGCACCTC ATTCCCAATG
1201GCCAGCATGG CCATTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1261CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1321TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACCGACGCAT GTGACATACG
1381ACTGACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)