Construct: ORF TRCN0000465891

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003278.1_s317c1
Derived from:
ccsbBroadEn_02742
DNA Barcode:
AAGTTGCACTGGAGATTTACGACA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KAZN (23254)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465891
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23254 KAZN kazrin, periplakin interact... NM_001017999.2 100% 100%
2 human 23254 KAZN kazrin, periplakin interact... NM_001018001.2 100% 100%
3 human 23254 KAZN kazrin, periplakin interact... NM_001370229.1 79.3% 79.3% 1_255del
4 human 23254 KAZN kazrin, periplakin interact... NM_001018000.3 78.7% 78.7% 1_264del
5 human 23254 KAZN kazrin, periplakin interact... NM_001370231.1 77.8% 77.8% 1_279del
6 human 23254 KAZN kazrin, periplakin interact... NM_015209.2 77.6% 77.6% 1_282del
7 human 23254 KAZN kazrin, periplakin interact... XM_017000771.1 77.6% 77.6% 1_282del
8 human 23254 KAZN kazrin, periplakin interact... NM_001370230.1 77.2% 71.3% 1_87del;847_848insGCAAC;912_913ins151
9 human 23254 KAZN kazrin, periplakin interact... XM_017000768.2 55.4% 52.6% (many diffs)
10 human 23254 KAZN kazrin, periplakin interact... XM_017000769.2 53.3% 49.8% (many diffs)
11 human 23254 KAZN kazrin, periplakin interact... XM_017000770.2 52.9% 49% 1_576del;1336_1337insGCAAC;1401_1402ins151
12 human 23254 KAZN kazrin, periplakin interact... XM_011541080.3 52.1% 50.4% (many diffs)
13 human 23254 KAZN kazrin, periplakin interact... NM_201628.3 41.4% 40.1% (many diffs)
14 human 23254 KAZN kazrin, periplakin interact... XM_011541076.2 40.8% 39.5% (many diffs)
15 human 23254 KAZN kazrin, periplakin interact... XM_011541077.2 40.8% 39.5% (many diffs)
16 human 23254 KAZN kazrin, periplakin interact... XM_005245795.5 36.7% 35.6% (many diffs)
17 human 23254 KAZN kazrin, periplakin interact... XM_011541075.2 36.7% 35.5% (many diffs)
18 human 23254 KAZN kazrin, periplakin interact... XM_011541074.3 32.8% 31.8% (many diffs)
19 mouse 71529 Kazn kazrin, periplakin interact... NM_001109685.1 72.3% 77.5% (many diffs)
20 mouse 71529 Kazn kazrin, periplakin interact... NM_001109684.1 70.5% 75.5% (many diffs)
21 mouse 71529 Kazn kazrin, periplakin interact... NM_144531.3 38% 39.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1047
ORF length:
981
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ggagatgttg gcgaaggacc tggaggagtc gcagggcggc aagtcctctg
121aggtcctctc ggccaccgag ctcagggtcc agctggccca gaaggagcag gagctagcca
181gagccaaaga agccttgcag gccatgaaag ctgatcggaa gcgcttaaag ggcgagaaga
241cagacctggt gagccagatg cagcagctgt atgccacact ggagagccgc gaggagcagc
301tccgagactt catccgcaac tatgagcagc accgcaagga gagcgaggat gcggtcaaag
361cgctggccaa ggagaaggac ctgctggagc gtgagaagtg ggagctgcgg cgccaagcca
421aggaggccac agaccacgcc acggcactgc gctcccagct ggacctcaag gacaaccgga
481tgaaggagct ggaggccgag ctggccatgg ccaaacagtc cttagctacg ctgaccaagg
541acgtccccaa gcggcattcc ctcgccatgc cgggcgagac ggtgctcaat ggcaaccagg
601agtgggtggt gcaggcggac ctcccgctga ccgcagccat ccggcagagt caacagactc
661tctaccactc acacccccct caccctgcgg accggcaagc ggtcagggtg agcccctgcc
721actcccggca gccctctgtc atcTCCGACG CATCTGCCGC CGAAGGCGAC CGGTCGTCCA
781CACCGAGCGA CATCAACTCC CCTCGACACC GGACACACTC CCTCTGCAAC GGCGACAGTC
841CCGGCCCAGT TCAGAAGAAC CTGCACAACC CTATTGTACA GTCACTAGAG GATCTTGAAG
901ACCAAAAACG GAAAAAGAAG AAAGAGAAGA TGGGATTCGG CTCCATCTCC CGCGTCTTCG
961CCAGAGGGAA GCAGCGGAAG TCCCTCGACC CCGGCCTCTT TGATGGTACC GCCCCTGATT
1021ATTACATAGA GGAGGACGCG GACTGGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
1081GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1141AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAAGTTGCA
1201CTGGAGATTT ACGACAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1261aagatt

Download FASTA (ORF) (Full)