Construct: ORF TRCN0000465991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016786.1_s317c1
Derived from:
ccsbBroadEn_06942
DNA Barcode:
TCAGACGAGTGTAGCCCGCCATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCG5 (6447)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465991
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6447 SCG5 secretogranin V NM_001144757.2 99.8% 99.5% 452T>C
2 human 6447 SCG5 secretogranin V NM_003020.4 99.3% 99% 373_374insCAG;449T>C
3 human 114118903 ARHGAP11A-SCG5 ARHGAP11A-SCG5 readthrough NM_001368319.1 33.6% 33.5% 1_1242del;1615_1616insCAG;1691T>C
4 mouse 20394 Scg5 secretogranin V NM_009162.3 87.5% 91.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
702
ORF length:
636
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ctccaggatg gtctctacca tgctatctgg cctactgttt tggctggcat
121ctggatggac tccagcattt gcttacagcc cccggacccc tgaccgggtc tcagaagcag
181atatccagag gctgcttcat ggtgttatgg agcaattggg cattgccagg ccccgagtgg
241aatatccagc tcaccaggcc atgaatcttg tgggccccca gagcattgaa ggtggagctc
301atgaaggact tcagcatttg ggtccttttg gcaacatccc CAACATCGTG GCAGAGTTGA
361CTGGAGACAA CATTCCTAAG GACTTTAGTG AGGATCAGGG GTACCCAGAC CCTCCAAATC
421CCTGTCCTGT TGGAAAAACA GCAGATGATG GATGTCTAGA AAACACCCCT GACACTGCAG
481AGTTCAGTCG AGAGTTCCAG TTGCACCAGC ATCTCTCTGA TCCGGAACAT GACTATCCAG
541GCTTGGGCAA GTGGAACAAG AAACTCCTTT ACGAGAAGAT GAAGGGAGGA GAGAGACGAA
601AGCGGAGGAG TGTCAATCCA TATCTACAAG GACAGAGACT GGATAATGTT GTTGCAAAGA
661AGTCTGTCCC CCATTTTTCA GATGAGGATA AGGATCCAGA GTACCCAACT TTCTTGTACA
721AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
781AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
841AGGACGATCA GACGAGTGTA GCCCGCCATT GACGCGTTAA GTCgacaatc aacctctgga
901ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)