Construct: ORF TRCN0000466021
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004667.1_s317c1
- Derived from:
- ccsbBroadEn_13773
- DNA Barcode:
- GCAGTCTGTATGCATTACGATCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466021
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927129 | LINC01580 | long intergenic non-protein... | NR_120322.1 | 17.1% | 1_326del;459_771del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 139
- ORF end:
- 271
- ORF length:
- 132
- Sequence:
-
1 CCTTGGAATT TGCCCTTTTT GAGTTTGGAT CTTGGTTCAT TCTCAAGCCT CAGACAGTGG 61 TTCAAAGTTT TTTTCTTCCA TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT 121 TTGTACAAAA AAGTTGGCAT GGATAATGGA AAGATCTACG GCAAGGCTGG CTGTCTGCCC 181 TGTCTAAGGA GGACGTACTG GACCATCCTG CTCTGCACAT CCAGATGTGT CCATGAATAC 241 ATCCATAAAA CGATGGCCTG TGGAATCCTA TACCCAACTT TCTTGTACAA AGTGGTTGAT 301 ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT 361 CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGCAG 421 TCTGTATGCA TTACGATCCG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt 481 gtgaaagatt