Construct: ORF TRCN0000466029
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001632.1_s317c1
- Derived from:
- ccsbBroadEn_05923
- DNA Barcode:
- TTTGCCTTAGCTTACAGAAAGGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DDR1 (780)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466029
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001297652.1 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001297653.1 | 99.8% | 99.7% | (many diffs) |
| 3 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001954.4 | 99.8% | 99.7% | (many diffs) |
| 4 | human | 780 | DDR1 | discoidin domain receptor t... | XM_017011269.2 | 99.1% | 99% | (many diffs) |
| 5 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001202523.1 | 97.8% | 97.7% | (many diffs) |
| 6 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514888.3 | 97.1% | 97.1% | (many diffs) |
| 7 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001297654.1 | 95.8% | 95.7% | (many diffs) |
| 8 | human | 780 | DDR1 | discoidin domain receptor t... | NM_013993.2 | 95.8% | 95.7% | (many diffs) |
| 9 | human | 780 | DDR1 | discoidin domain receptor t... | NM_013994.2 | 95.1% | 95.1% | (many diffs) |
| 10 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514883.2 | 95.1% | 95.1% | (many diffs) |
| 11 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514884.1 | 95.1% | 95.1% | (many diffs) |
| 12 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514885.2 | 95.1% | 95.1% | (many diffs) |
| 13 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514886.2 | 95.1% | 95.1% | (many diffs) |
| 14 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514887.2 | 95.1% | 95.1% | (many diffs) |
| 15 | human | 780 | DDR1 | discoidin domain receptor t... | XM_017011268.2 | 95.1% | 95.1% | (many diffs) |
| 16 | human | 780 | DDR1 | discoidin domain receptor t... | XM_024446540.1 | 95.1% | 95.1% | (many diffs) |
| 17 | human | 780 | DDR1 | discoidin domain receptor t... | XM_024446541.1 | 95.1% | 95.1% | (many diffs) |
| 18 | human | 780 | DDR1 | discoidin domain receptor t... | XM_024446542.1 | 95.1% | 95.1% | (many diffs) |
| 19 | human | 780 | DDR1 | discoidin domain receptor t... | XM_006715185.2 | 93.9% | 93.8% | (many diffs) |
| 20 | human | 780 | DDR1 | discoidin domain receptor t... | XM_011514882.2 | 93.3% | 93.2% | (many diffs) |
| 21 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001202522.1 | 87.4% | 85.6% | (many diffs) |
| 22 | human | 780 | DDR1 | discoidin domain receptor t... | NM_001202521.1 | 57.6% | 57.7% | (many diffs) |
| 23 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | NM_172962.1 | 87% | 92.9% | (many diffs) |
| 24 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523538.3 | 87% | 92.9% | (many diffs) |
| 25 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | NM_001198831.1 | 83.5% | 89.1% | (many diffs) |
| 26 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | NM_001198833.1 | 83.5% | 89.1% | (many diffs) |
| 27 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | NM_007584.2 | 83.5% | 89.1% | (many diffs) |
| 28 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523533.1 | 83.5% | 89.1% | (many diffs) |
| 29 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523534.1 | 83.5% | 89.1% | (many diffs) |
| 30 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523535.3 | 83.5% | 89.1% | (many diffs) |
| 31 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523536.3 | 83.5% | 89.1% | (many diffs) |
| 32 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_006523537.1 | 83.5% | 89.1% | (many diffs) |
| 33 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XM_011246259.1 | 83.5% | 89.1% | (many diffs) |
| 34 | mouse | 12305 | Ddr1 | discoidin domain receptor f... | XR_001782030.1 | 59% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2694
- ORF length:
- 2628
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg accagaggcc ctgtcatctt tactgctgct gctcttggtg gcaagtggag 121 atgctgacat gaagggacat tttgatcctg ccaagtgccg ctatgccctg ggcatgcagg 181 accggaccat cccagacagt gacatctctg cttccagctc ctggtcagat tccactgccg 241 cccgccacag caggttggag agcagtgacg gggatggggc ctggtgcccc gcagggtcgg 301 tgtttcccaa ggaggaggag tacttgcagg tggatctaca acgactgcac ctggtggctc 361 tggtgggcac ccagggacgg catgccgggg gcctgggcaa ggagttctcc cggagctacc 421 ggctgcgtta ctcccgggat ggtcgccgct ggatgggctg gaaggaccgc tggggtcagg 481 aggtgatctc aggcaatgag gaccctgagg gagtggtgct gaaggacctt gggcccccca 541 tggttgcccg actggttcac ttctaccccc gggctgaccg ggtcatgagc gtctgtctgc 601 gggtagagct ctatggctgc ctctggaggg atggactcct gtcttacacc gcccctgtgg 661 ggcagacaat gtatttatct gaggccgtgt acctcaacga ctccacctat gacggacata 721 ccgtgggcgg actgcagtat gggggtctgg gccagctggc agatggtgtg gtggggctgg 781 atgactttag gaagagtcag gagctgcggg tctggccagg ctatgactat gtgggatgga 841 gcaaccacag cttctccagt ggctatgtgg agatggagtt tgagtttgac cggctgaggg 901 ccttccaggc tatgcaggtc cactgtaaca acatgcacac gctgggagcc cgtctgcctg 961 gcggggtgga atgtcgcttc cggcgtggcc ctgccatggc ctgggagggg gagcccatgc 1021 gccacaacct agggggcaac ctgggggacc ccagagcccg ggctgtctca gtgccccttg 1081 gcggccgtgt ggctcgcttt ctgcagtgcc gcttcctctt tgcggggccc tggttactct 1141 tcagcgaaat ctccttcatc tctgatgtgg tgaacaattc ctctccggca ctgggaggca 1201 ccttcccgcc agccccctgg tggccgcctg gcccacctcc caccaacttc agcagcttgg 1261 agctggagcc cagaggccag cagcccgtgg ccaaggccga ggggagcccg accgccatcc 1321 tcatcggctg cctggtggcc atcatcctgc tcctgctgct catcattgcc ctcatgctct 1381 ggcggctgca ctggcgcagg ctcctcagca aggctgaacg gagggtgttg gaagaggagc 1441 tgacggttca cctctctgtc cctggggaca ctatcctcat caacaaccgc ccaggtccta 1501 gagagccacc cccgtaccag gagccccggc ctcgtgggaa tccgccccac tctgctccct 1561 gtgtccccaa tggctctgcc tacagtgggg actatatgga gcctgagaag ccaggcgccc 1621 cgcttctgcc cccacctccc cagaacagcg tcccccatta tgccgaggct gacattgtta 1681 ccctgcaggg cgtcaccggg ggcaacacct atgctgtgcc tgcactgccc ccaggggcag 1741 tcggggatgg gccccccaga gtggatttcc ctcgatctcg actccgcttc aaggagaagc 1801 ttggcgaggg ccagtttggg gaggtgcacc tgtgtgaggt cgacagccct caagatctgg 1861 tcagtcttga tttccccctt aatgtgcgta agggacaccc tttgctggta gctgtcaaga 1921 tcttacggcc agatgccacc aagaatgcca ggaatgattt cctgaaagag gtgaagatca 1981 tgtcgaggct caaggaccca aacatcattc ggctgctggg cgtgtgtgtg caggacgacc 2041 ccctctgcat gattactgac tacatggaga acggcgacct caaccagttc ctcagtgccc 2101 accagctgga ggacaaggca gccgaggggg cccctgggga cgggcaggct gcgcaggggc 2161 ccaccatcag ctaccaaatg ctgctgcatg tggcagccca gatcgcctcc ggcatgcgct 2221 atctggccac actcaacttt gtacatcggg acctggccac gcggaactgc ctagttgggg 2281 aaaatttcac catcaaaatc gcagactttg gcatgagccg gaacctctat gctggggact 2341 attaccgtgt gcagggccgg gcagtgctgc ccatccgctg gatggcctgg gagtgcatcc 2401 TCATGGGGAA GTTCACGACT GCGAGTGACG TGTGGGCCTT TGGTGTGACC CTGTGGGAGG 2461 TGCTGATGCT CTGTAGGGCC CAGCCCTTTG GGCAGCTCAC CGACGAGCAG GTCATCGAGA 2521 ACGCGGGGGA GTTCTTCCGG GACCAGGGCC GGCAGGTGTA CCTGTCCCGG CCGCCTGCCT 2581 GCCCGCAGGG CCTATATGAG CTGATGCTTC GGTGCTGGAG CCGGGAGTCT GAGCAGCGAC 2641 CACCCTTTTC CCAGCTGCAT CGGTTCCTGG CAGAGGATGC ACTCAACACG GTGTGCCCAA 2701 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2761 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2821 TATCTTGTGG AAAGGACGAT TTGCCTTAGC TTACAGAAAG GGAACGCGTT AAGTCgacaa 2881 tcaacctctg gattacaaaa tttgtgaaag att