Construct: ORF TRCN0000466172

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002274.1_s317c1
Derived from:
ccsbBroadEn_03315
DNA Barcode:
AAATTCCCTCGGTGTATTCAGTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NOP16 (51491)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466172
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51491 NOP16 NOP16 nucleolar protein NM_016391.8 100% 100%
2 human 51491 NOP16 NOP16 nucleolar protein NM_001317975.2 84.9% 81.3% (many diffs)
3 human 51491 NOP16 NOP16 nucleolar protein NM_001291307.3 77.5% 77.5% 391_392ins120
4 human 51491 NOP16 NOP16 nucleolar protein NM_001256539.3 56.8% 55.2% 391_392ins88;447_696del
5 human 51491 NOP16 NOP16 nucleolar protein NM_001256540.4 56.5% 55.2% 391_392ins91;444_693del
6 human 51491 NOP16 NOP16 nucleolar protein NM_001291308.3 55.6% 43.8% 215_216ins70;297_298ins167
7 human 51491 NOP16 NOP16 nucleolar protein XM_011534567.1 55.6% 43.8% 215_216ins70;297_298ins167
8 human 51491 NOP16 NOP16 nucleolar protein NR_134316.2 54.1% (many diffs)
9 human 51491 NOP16 NOP16 nucleolar protein NR_134318.2 45.6% (many diffs)
10 human 51491 NOP16 NOP16 nucleolar protein NM_001291305.3 45.2% 29.3% (many diffs)
11 mouse 28126 Nop16 NOP16 nucleolar protein NM_178605.4 88.2% 91% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
600
ORF length:
534
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc caaggccaag ggcaaaaccc ggaggcagaa gtttggttac agtgtcaacc
121gaaagcgtct gaaccggaat gctcgacgga aggcagcgcc gcggatcgaa tgctcccaca
181tccgacatgc ctgggaccac gctaaatcgg tacggcagaa cctggccgag atggggttgg
241ctgtggaccc caacagggcg gtgcccctcc gtaagagaaa ggtgaaggcc atggaggtgG
301ACATAGAGGA GAGGCCTAAA GAGCTTGTAC GGAAGCCCTA TGTGCTGAAT GACCTGGAGG
361CAGAAGCCAG CCTTCCAGAA AAGAAAGGAA ATACTCTGTC TCGGGACCTC ATTGACTATG
421TACGCTACAT GGTAGAGAAC CACGGGGAGG ACTATAAGGC CATGGCCCGT GATGAGAAGA
481ATTACTATCA AGATACCCCA AAACAGATTC GGAGTAAGAT CAACGTCTAT AAACGCTTTT
541ACCCAGCAGA GTGGCAAGAC TTCCTCGATT CTTTGCAGAA GAGGAAGATG GAGGTGGAGT
601GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
661GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
721TTTATATATC TTGTGGAAAG GACGAAAATT CCCTCGGTGT ATTCAGTAGA CGCGTTAAGT
781Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)