Construct: ORF TRCN0000466178
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011786.1_s317c1
- Derived from:
- ccsbBroadEn_14297
- DNA Barcode:
- TACAGGTATGTTATAAATGTCCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD99L2 (83692)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466178
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83692 | CD99L2 | CD99 molecule like 2 | XM_011531202.2 | 99.7% | 99.3% | 422T>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 501
- ORF length:
- 435
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt ggcctggcgc tcggcgttcc ttgtctgcct cgctttctcc ttggccaccc 121 tggtccagcg aggatctggg gactttgatg attttaaccT GGAGGATGCA GTGAAAGAAA 181 CTTCCTCAGT AAAGCCTGCC TTAGGAATGT ACCACAAACT AGATGGCTTA AAACAACAGA 241 ACTTTATTCT GTCACTGTTC TGGATGCTAG AAGTTCTATA TCAAGGTGTT GGTTGGGCCA 301 CATTCTCTCT GAAGGCTCTA GGGAAGAATC TTTCCTTGAC TTTCCCCACT TCTGGTGGCT 361 CTAGGTGTTC CTTGGTTTGT GGTTGCATCA CTCCAATCTC TGCCTCTGTT GTCACGTGGT 421 GTTCCCCTTT CTGTGTCTCT CTCCTTTCTC TTACAAAGAT GCTTGTTAGT GGGTTTAAGG 481 CCCACCGGGA TAATCCAGGA TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 541 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 601 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATACA GGTATGTTAT 661 AAATGTCCAC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt