Construct: ORF TRCN0000466404
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010006.1_s317c1
- Derived from:
- ccsbBroadEn_12377
- DNA Barcode:
- CGGCTCATCTACCAGAGCAAAGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NYAP2 (57624)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466404
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57624 | NYAP2 | neuronal tyrosine-phosphory... | NM_020864.1 | 22.1% | 13.7% | (many diffs) |
| 2 | human | 57624 | NYAP2 | neuronal tyrosine-phosphory... | XM_005246708.4 | 22.1% | 13.7% | (many diffs) |
| 3 | human | 57624 | NYAP2 | neuronal tyrosine-phosphory... | NM_001371273.1 | 20% | 12.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 504
- ORF length:
- 435
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gatatcctcc aagatgatga gttctaatcc tgaggaagac cctttggaca 121 catttctcca gtacattgag gatatgggga tgaaggccTA CGATGGCTTG GTTATTCAGA 181 ATGCGTCAGA TATTGCTCGA GAGAATGATC GCTTGAGAAA TGAAACTAAC CTAGCCTATT 241 TGAAAGAGAA GAATGAAAAA CGCCGAAGAC AAGAAGAAGC AATAAAGCGA ATCAACAGAG 301 GAACTGAAAG TCCGAAGCCA CAGCACGGAG CCATTACCAA AGTTGGACAA CAAGGAAAGA 361 GGCCACCATG GGGCGTCTTC CTCCAGAGAG CCTGTCAAAG CTCAGGAATG GGATGGAACA 421 CCAGGGCCAC CTGTGGTCAC CAGTCGACTA GGAAGATGCT CTGTGAGCCC CACCTTGTTA 481 GCGGGAAACC ACAGTTCAGA GCCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 541 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 601 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC GGCTCATCTA 661 CCAGAGCAAA GTCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 721 att