Construct: ORF TRCN0000466610

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014572.1_s317c1
Derived from:
ccsbBroadEn_07841
DNA Barcode:
GGATCTTAATCTCCTCTTCAGGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRCH1 (23143)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466610
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23143 LRCH1 leucine rich repeats and ca... NM_001164211.2 99.8% 99.8% 282C>T;700T>C;2061A>G
2 human 23143 LRCH1 leucine rich repeats and ca... NM_015116.3 95.2% 95.2% (many diffs)
3 human 23143 LRCH1 leucine rich repeats and ca... XM_017020483.2 94.1% 92.2% (many diffs)
4 human 23143 LRCH1 leucine rich repeats and ca... NM_001164213.2 89.5% 87.6% (many diffs)
5 human 23143 LRCH1 leucine rich repeats and ca... XM_017020484.1 61% 59.1% (many diffs)
6 human 23143 LRCH1 leucine rich repeats and ca... XR_001749525.2 45.2% (many diffs)
7 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519155.3 84.7% 86.4% (many diffs)
8 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519154.3 81.8% 83.4% (many diffs)
9 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519157.3 81.7% 81.6% (many diffs)
10 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519158.3 80.3% 82% (many diffs)
11 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_017316067.1 79.2% 80.1% (many diffs)
12 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519156.2 76.5% 77.4% (many diffs)
13 mouse 380916 Lrch1 leucine-rich repeats and ca... XM_006519160.3 61.9% 62.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2358
ORF length:
2289
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgacgccg ggaagcgaac cccaaccttt cgtcccggcc ctttcggtag
121ctactctgca cccacttcat catccccacc accaccacca ccaccatcag caccacggag
181gaaccggcgc ccccggcggg gcgggtggtg gcggcggtgg cagcgggggc ttcaacctgc
241ccttgaaccg gggtctggag cgcgcgcttg aggaggcggc caactccggg gggctgaacc
301tgagcgccag gaaattgaag gaatttcccc gtaccgcagc ccccgggcat gacctctcgg
361acacggtgca ggcagactta tctaaaaaca gactggttga agttccaatg gaattgtgcc
421attttgtatc actggaaatt cttaatctgt atcacaactg tatcagagtc attcctgagg
481ccatcgttaa tctgcagatg ctgacttacc tgaacttgag tcgaaatcag ctgtccgccc
541tgcctgcctg cctgtgtggt ctgcctctca aagtcttaat cgcaagtaac aacaaacttg
601gatcattacc agaagagata ggtcagctca aacagttaat ggagctggat gtcagctgca
661acgagatcac agcgttgccc cagcagatag gtcagttgaa atctctacga gaactgaatg
721tcagaagaaa ttaccttaaa gttttaccac aagaactagt agatcttccc ttggtaaagt
781ttgacttttc ctgcaacaaa gtgctcgtga ttccaatttg ttttagagag atgaagcagc
841tgcaagtgtt actacttgag aataaccctc tgcagtctcc tccagcacag atttgcacaa
901agggcaaagt tcacatattt aagtatctga gcatacaagc atgccagatt aagacagctg
961actcccttta tctccacacc atggagaggc cacatttaca ccagcacgtg gaagatggca
1021agaaggattc tgattcggga gttggaagtg ataatggaga taagcgatta tctgccaccg
1081agccttctga cgaagacact gttagcctca atgtgccaat gtcaaacatc atggaagaag
1141aacagatcat caaggaggac tcgtgccatc gccttagccc cgttaaaggg gaatttcatc
1201aggaatttca accggagcct tcccttttgg gtgacagcac caactcagga gaagaaagag
1261accagtttac tgatagagca gatggtctcc attcggaatt tatgaactat aaggcaaggg
1321cagaagactg tgaagagctg ttacggatag aagaggatgt gcactggcaa actgagggca
1381taataagttc atccaaagat caggacatgg atatagcaat gatcgagcag ctgagagaag
1441cagtagattt gctgcaagat cccaatggat taagcacaga tattacagag agaagtgttt
1501taaacctata tcctatggga tcagcagaag ccttagaatt acaagattct gcactgaatg
1561gtcaaataca gctggagaca tctccggtgt gtgaggtgca aagtgatcta acattacaga
1621gtaacgggag ccagtattct ccaaatgaga ttagagagaa ctcccctgca gtctctccta
1681ccacaaacag cacagctcca tttggcctga agcctcgatc agacccagcc ctcattcttc
1741ctcctatctc cttcaacaca cttacacagg cacagacatg ggacagctct agctacagtg
1801ttccatctga aggagacagt gacaatgtgt ttctaagacc tcagagaaat ttggaatcta
1861tagacccgca gtttacaatc cggaggaaaa tggagcagat gagagaagag aaagagctgg
1921tggaacaact tcgtgagagc attgagatga gattgaaggt cagtctacac gaagacctgg
1981gggcagccct catggatggt gtcgtccTCT GCCATCTGGT CAACCACATC CGCCCACGGT
2041CGGTTGCAAG CATCCATGTC CCATCACCAG CGGTTCCCAA ACTTAGCATG GCCAAATGCA
2101GAAGAAATGT GGAAAACTTT TTGGAAGCGT GCCGAAAATT AGGAGTACCA GAGGCTGACC
2161TCTGCTCTCC GTGTGACATC CTGCAGTTGG ATTTTCGTCA CATTCGAAAG ACTGTTGACA
2221CTCTGCTGGC ACTCGGGGAG AAAGCCCCAC CACCAACTTC TGCCCTCCGC TCCAGGGACC
2281TTATAGGCTT CTGTCTTGTC CATATTCTCT TTATAGTGCT GGTCTATATC ACTTACCACT
2341GGAATGCTCT GTCCGCATTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
2401TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2461GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGGATCTT AATCTCCTCT
2521TCAGGCGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

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