Construct: ORF TRCN0000466637

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005040.1_s317c1
Derived from:
ccsbBroadEn_05401
DNA Barcode:
TTCTCTAACACGTACCTTCCAATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STPG2 (285555)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466637
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285555 STPG2 sperm tail PG-rich repeat c... NM_174952.3 100% 100%
2 human 285555 STPG2 sperm tail PG-rich repeat c... XM_024454012.1 79.7% 78.2% (many diffs)
3 human 285555 STPG2 sperm tail PG-rich repeat c... XM_011531886.3 78.7% 76.2% (many diffs)
4 human 285555 STPG2 sperm tail PG-rich repeat c... XM_017008049.2 74.5% 69.9% (many diffs)
5 human 285555 STPG2 sperm tail PG-rich repeat c... XM_017008051.2 53.5% 48.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1443
ORF length:
1377
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgta tgatcgggct ccccgcctgc tcaaattggc tgaaggtggc agcactgagg
121cccatgtggg tcctggatcc taccaggtac ctttcctgaa gcagcaggcg acaggtagta
181atgcaccatt tctttctttg actgccagag aaagtacttt taccattgcc tctagcattg
241agaaagctgt tccaggtcca ggacactata atgtttcaga agcacagaaa atttcaagat
301cacctacact taccagaagt gttgatgttc cttcaattcc ttcttgtgga aagtcatatg
361gttatcatat taatgatgat ggcagtatta taaaatgttt tccacctgct tgtgacagta
421cacttggtcc agcatactac aaacctcaat ttgatgtttc caatgcaact ttgaaataca
481aaggtataca ttttggcaac tcttcaggaa gacaagagtt acctaaaaag tcaggtcctg
541gtccaggaca gtatgatata gtccagaaaa agacatcata ttatgaaaat gttaacatca
601agagagatca acaacaaaat tattgttcat ttatcccacg actatatgaa ataatagtat
661tgcaggagaa aaaaaagaga tttttaccta tgaaatcaat caccccggct cctggcacat
721ataatgaacc tcgaactgct ctcaagtctt tgaagaaaac atcaggactg aaaaatattc
781catttggtca aagtgctgtt cgattcacac aggacatcag gacagaggaa atgccaggtc
841ctggatttta taatgtcttg aacaatacta taattgccag tgttagaaat atctgctcaa
901agaaacagaa gaaaagtgca tttggttctt ctgttcctcg gactttcttc tcggttcaga
961aagaagcttg tgctacccct ggacctgctg attatcagga attttggcat tcacagggtg
1021tgggaattTC TGATGAATTA CCTAACTTGA CTAACAAATA TGCTGCTTTC TTGTCAAGAG
1081CCAAAAGAAC TATGAAAGTA CCAGATATGG TTATTCCAGC GCCAGGCAGC TATGATGTTC
1141ACAAATCATA TGAGATGTCC CAAGTTAAGC ATAAATATAT GCCACCTCGT AGTTTAGTGG
1201CTAAAAGAAA ACATGCCTCT TTTCTTAGTG CAACTCCTCG GTGCCTAGAA AAAGTGACTG
1261ATGGGCCAGG TCCTGCAGCA TACAATCCTG TTTTAAGGAA ATCTTGCCCC ATACCCTTAT
1321TTGTGAAAGC ATCAAAGCGC TTTGAAGAGT CCAAAGAGAT TACTCCAGGC CCAGCAACAT
1381ATGAGATATC CCAGGAGAAA AAGAAAGGAA ATCTCATTGG TGAAATGGCT GCTGATATAA
1441TGTGTCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1501TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1561GGCTTTATAT ATCTTGTGGA AAGGACGATT CTCTAACACG TACCTTCCAA TAACGCGTTA
1621AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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