Construct: ORF TRCN0000466704

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016071.1_s317c1
Derived from:
ccsbBroadEn_11647
DNA Barcode:
ACGTAGAACTATTACGTTTATCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAN1 (22909)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466704
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22909 FAN1 FANCD2 and FANCI associated... NM_001146094.1 99.5% 99.4% 1_3delATG;27_28insAAA;698G>A
2 human 22909 FAN1 FANCD2 and FANCI associated... NM_001146095.1 99.5% 99.4% 1_3delATG;27_28insAAA;698G>A
3 human 22909 FAN1 FANCD2 and FANCI associated... NM_001146096.1 99.5% 99.4% 1_3delATG;27_28insAAA;698G>A
4 human 22909 FAN1 FANCD2 and FANCI associated... XM_011521372.2 86.6% 86.2% (many diffs)
5 human 22909 FAN1 FANCD2 and FANCI associated... NM_014967.5 51.9% 51.6% (many diffs)
6 human 22909 FAN1 FANCD2 and FANCI associated... XM_005254232.4 51.9% 51.6% (many diffs)
7 human 22909 FAN1 FANCD2 and FANCI associated... XM_005254234.5 51.9% 51.6% (many diffs)
8 human 22909 FAN1 FANCD2 and FANCI associated... XM_005254235.3 51.9% 51.6% (many diffs)
9 human 22909 FAN1 FANCD2 and FANCI associated... XR_001751151.1 23.2% (many diffs)
10 human 22909 FAN1 FANCD2 and FANCI associated... XR_001751149.1 23.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1665
ORF length:
1599
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc agaagggaaa cctcctgaca aaaaaaaaag gcctcgtaga agcttatcaa
121tcagcaagaa taagaaaaaa gcatctaatt ctattatttc gtgttttaac aatgcaccac
181ctgctaaact tgcctgcccc gtttgcagta aaatggtgcc tagatatgac ttaaaccggc
241accttgatga aatgtgtgct aacaatgact tcgttcaagt ggatccaggg caggttggct
301taataaattc aaatgtgtct atggtagatt taaccagtgt taccttagaa gatgtaacac
361ctaagaagtc accaccacca aagacaaatt taacccctgg ccaaagtgat tcagcaaaaa
421gggaagtaaa gcagaagatc agtccctact ttaaaagtaa tgatgtggtg tgcaaaaatc
481aagatgagct gagaaatcgt agtgtgaaag tcatttgttt gggaagccta gcatctaaat
541tgtccagaaa atacgtaaag gctaaaaaat caatagataa ggatgaagaa tttgccggtt
601ctagtccaca gagttccaaa tccacagttg ttaagagcct gattgataac tcttcagaaa
661ttgaggacga ggatcaaatt ttggagaaca gttctcaaaa agaaaacgtg tttaaatgtg
721attctctaaa ggaagagtgc attcctgaac atatggtaag agaaagtaaa ataatggaag
781ccgaaagcca aaaggctacc cgggaatgtg agaaatcagc cctcacccct ggattctcag
841ataatgcgat catgttattc tcaccagatt tcactcttag gaatacatta aagtctactt
901cagaagacag tcttgtaaag caagagtgta tcaaagaagt ggttgaaaaa cgtgaggcat
961gtcattgtga agaagtaaaa atgactgttg cttcagaagc taaaatacag ctgtcagatt
1021cagaggcaaa atctcatagt tctgcagatg atgcttctgc atggagtaac atccaagagg
1081ctcctctgca ggatgacagt tgcttaaaca atgatatccc tcacagcatt cctttggagc
1141aggggtcaag ctgcaatggt cctggtcaaa caaccggtca tccttactac cttcggagtt
1201tccttgtggt gctgaaaacc gtacttgaga atgaagatga tatgttgctc tttgatgagc
1261aggagaaggg aattgtaact aaattttatc agttaTCAGC TACTGGTCAG AAGTTATATG
1321TAAGGCTCTT TCAACGTAAA TTAAGCTGGA TTAAGATGAC CAAATTAGAG TATGAAGAGA
1381TTGCCTTAGA CTTAACACCT GTGATTGAAG AATTGACGAA TGCAGGCTTT CTACAGACAG
1441AATCTGAGTT GCAAGAACTC TCTGAAGTGC TTGAACTCCT TTCTGCTCCT GAACTAAAAT
1501CCCTAGCCAA GACCTTCCAC TTGGTGAATC CCAATGGACA GAAACAGCAG CTGGTGGACG
1561CCTTTCTCAA ATTGGCCAAA CAGCGTTCAG TCTGCACTTG GGGCAAGAAT AAGCCTGGAA
1621TTGGTGCAGT GATTTTAAAA AGGTTTTGTT GGCTATTGTT ACAGTACCCA ACTTTCTTGT
1681ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1741AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1801GAAAGGACGA ACGTAGAACT ATTACGTTTA TCAGACGCGT TAAGTCgaca atcaacctct
1861ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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