Construct: ORF TRCN0000467230

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008475.1_s317c1
Derived from:
ccsbBroadEn_12162
DNA Barcode:
TTGATTCCCGCAGGTTAACACAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRPF38B (55119)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467230
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55119 PRPF38B pre-mRNA processing factor 38B XM_011541687.3 92.9% 91.6% (many diffs)
2 human 55119 PRPF38B pre-mRNA processing factor 38B NM_018061.4 34.1% 34% 559_560delGAinsTTCTTCAC;564_1638delinsC
3 human 55119 PRPF38B pre-mRNA processing factor 38B NM_001349757.2 13.8% 13.7% 0_1ins333;226_227delGAinsTTCTTCAC;231_1305delinsC
4 human 55119 PRPF38B pre-mRNA processing factor 38B XR_001737264.2 12.7% (many diffs)
5 human 55119 PRPF38B pre-mRNA processing factor 38B XR_001737263.2 12.5% (many diffs)
6 mouse 66921 Prpf38b PRP38 pre-mRNA processing f... NM_025845.2 32% 33.9% (many diffs)
7 mouse 66921 Prpf38b PRP38 pre-mRNA processing f... XR_001783735.1 16.7% (many diffs)
8 mouse 66921 Prpf38b PRP38 pre-mRNA processing f... XM_006501914.1 13.3% 13.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
636
ORF length:
570
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc taacaacagc cccgcgctga caggcaactc gcagccgcag caccaggcgg
121ctgcagctgc ggctcagcaa cagcagcagt gcggcggcgg cggcgctacc aagccggcgg
181tctccggcaa gcagggcaat gtgctcccgc tctggggcaa cgagaagacc atgaacctca
241accccatgat cctgaccaac atcctgtcgt cgccttactt caaagtacag ctctacgagc
301tcaagaccTA CCACGAGGTG GTGGACGAGA TCTACTTTAA GGTCACGCAC GTTGAACCAT
361GGGAGAAAGG AAGCAGGAAA ACAGCGGGCC AGACAGGGAT GTGCGGAGGG GTTCGAGGTG
421TTGGAACAGG AGGAATTGTT TCTACAGCAT TTTGCCTGTT ATACAAATTA TTTACCCTGA
481AGTTAACTCG AAAGCAAGTG ATGGGTCTTA TAACACACAC AGACTCTCCA TATATTAGAG
541CGCTTGGATT TATGTATATA AGATATACAC AGCCCCCTAC AGATCTGTGG GACTGGTTTG
601AATCCTTCCT TGATGATGAA GAGTTCTTCA CCCTCTACCC AACTTTCTTG TACAAAGTGG
661TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
721CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
781ATTGATTCCC GCAGGTTAAC ACAGAACGCG TTAAGTCgac aatcaacctc tggattacaa
841aatttgtgaa agatt

Download FASTA (ORF) (Full)