Construct: ORF TRCN0000467308

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011687.1_s317c1
Derived from:
ccsbBroadEn_04213
DNA Barcode:
TAGACCTGTTCCCTTGTCGCGGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
REEP4 (80346)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467308
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80346 REEP4 receptor accessory protein 4 NM_025232.4 100% 100%
2 human 80346 REEP4 receptor accessory protein 4 NM_001316964.2 67.8% 75% 552_553ins155;617_753del
3 human 80346 REEP4 receptor accessory protein 4 NM_001316965.2 67.3% 57.4% 416_417ins136;519_520ins116
4 mouse 72549 Reep4 receptor accessory protein 4 NM_180588.2 85.2% 88.3% (many diffs)
5 mouse 72549 Reep4 receptor accessory protein 4 XM_006519598.3 74.7% 77.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
837
ORF length:
771
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gtcctggatg atctgtcgcc tggtggtgct ggtgtttggg atgctgtgtc
121cagcttatgc ttcctataag gctgtgaaga ccaagaacat tcgtgaatat gtgcggtgga
181tgatgtactg gattgttttt gcactcttca tggcagcaga gatcgttaca gacattttta
241tctcctggtt ccctttctac tatgagatca agatggcctt cgtgctgtgg ctgctctcac
301cctacaccaa gggcgccagc ctgctttacc gcaagtttgt ccacccgtcc ctgtcccgcc
361atgagaagga gatcgacgcg tacatcgtgc aggccaagga gcgcagctac gagaccgtgc
421tcagcttcgg gaagcggggc ctcaacattg ccgccTCCGC TGCTGTGCAG GCTGCCACCA
481AGAGTCAGGG GGCGCTGGCC GGCAGGCTGC GGAGCTTCTC CATGCAGGAC CTGCGCTCCA
541TCTCTGACGC ACCTGCCCCT GCCTACCATG ACCCCCTCTA CCTGGAGGAC CAGGTGTCCC
601ACCGGAGGCC ACCCATTGGG TACCGGGCCG GGGGCCTGCA GGACAGCGAC ACCGAGGATG
661AGTGTTGGTC AGATACTGAG GCAGTCCCCC GGGCGCCAGC CCGGCCCCGA GAGAAGCCCC
721TAATCCGCAG CCAGAGCCTG CGTGTGGTCA AGAGGAAGCC ACCGGTGCGG GAGGGCACCT
781CGCGCTCCCT GAAGGTTCGG ACGAGGAAAA AGACTGTGCC CTCAGACGTG GACAGCTACC
841CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
901TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
961ATATATCTTG TGGAAAGGAC GATAGACCTG TTCCCTTGTC GCGGCAACGC GTTAAGTCga
1021caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)