Construct: ORF TRCN0000467316
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017865.1_s317c1
- Derived from:
- ccsbBroadEn_08290
- DNA Barcode:
- TTTGCGCCCGGTCTCGGCCTCAGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX9 (51429)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467316
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51429 | SNX9 | sorting nexin 9 | NM_016224.5 | 99.9% | 99.8% | 267G>C |
| 2 | human | 51429 | SNX9 | sorting nexin 9 | XM_005267015.2 | 98.7% | 98.6% | 0_1ins21;246G>C |
| 3 | human | 51429 | SNX9 | sorting nexin 9 | XM_011535886.3 | 83.5% | 83.1% | (many diffs) |
| 4 | mouse | 66616 | Snx9 | sorting nexin 9 | NM_025664.5 | 87.1% | 90.4% | (many diffs) |
| 5 | mouse | 66616 | Snx9 | sorting nexin 9 | XM_017317612.1 | 86.7% | 89.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1851
- ORF length:
- 1785
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc caccaaggct cgggttatgt atgattttgc tgctgaacct ggaaataatg 121 aactgacggt taatgaagga gaaatcatca caatcacaaa tccggatgta ggtggaggat 181 ggctggaagg aagaaacatc aaaggagaac gagggctggt tcccacagac tacgttgaaa 241 ttttacccag tgatggaaaa gatcaatttt cttgtggaaa ttcagtggct gaccaagcct 301 tccttgattc tctctcagcc agcacagctc acgccagttc gtcggctgcc agcaacaatc 361 accaggttgg cagtggcaat gacccctggt cagcctggag tgcctccaaa tctgggaact 421 gggaaagctc agaaggctgg ggggcccagc cagagggggc tggagcccaa agaaacacaa 481 acactcccaa caactgggac actgccttcg gccaccccca ggcctaccaa ggaccagcaa 541 ctggtgatga tgatgactgg gatgaagact gggatgggcc caaatcctct tcctacttta 601 aggattcaga gtcagctgat gcaggcggcg ctcagcgagg aaacagtcgt gctagttcct 661 catccatgaa aattcccctt aacaaatttc ctggatttgc gaaacctggc acggaacagt 721 atttgttggc caaacaacta gcaaaaccca aagagaaaat tcccatcatt gttggagatt 781 atggcccaat gtgggtttat cctacctcta cttttgactg tgtggtagca gatcccagga 841 aaggctccaa aatgtatggt ctaaagagct acatcgaata tcagctaaca cctactaaca 901 ctaatcgatc tgtaaaccac aggtataagc actttgactg gttatatgag cgtctcctgg 961 ttaagtttgg gtcagccatt ccaatccctt ctcttccaga caaacaagtc acaggccgct 1021 ttgaagagga atttatcaaa atgcgcatgg agagacttca ggcctggatg accaggatgt 1081 gtcgccatcc agtaatctca gaaagtgaag ttttccagca gttcctaaat ttccgagatg 1141 agaaggaatg gaaaactgga aagaggaagg ccgagagaga tgagctggcg ggagtcatga 1201 tattttccac catggaacca gaggcacctg acttggactt agtagaaata gagcagaagt 1261 gcgaggctgt ggggaagttc accaaggcca tggatgacgg cgtgaaggag ctgctgacgg 1321 tggggcagga gcactggaag cgctgcacgg gcccattacc caaggaatat cagaagatag 1381 gaaaggcctt gcagagtttg gccacagtgt tcagttccag tggctatcaa ggtgaaacag 1441 atctcaatga tgcaataaca gaagcaggaa agacttatga agaaattgcc agtctcgtgg 1501 cagaacagcc aaagaaagat ctccatttcc tgatggaatg taatcacgag tataaaggtt 1561 ttcttGGCTG CTTCCCTGAC ATCATTGGCA CTCACAAGGG AGCAATAGAA AAAGTGAAAG 1621 AAAGTGACAA ACTAGTTGCA ACAAGTAAAA TCACCCTACA AGACAAACAG AACATGGTGA 1681 AGAGAGTCAG CATCATGTCT TACGCGTTGC AAGCTGAGAT GAATCACTTT CACAGTAACC 1741 GGATCTATGA TTACAACAGT GTCATCCGCC TGTACCTGGA GCAGCAAGTG CAATTTTACG 1801 AAACGATTGC AGAAAAGCTG AGGCAGGCCC TCAGCCGCTT TCCAGTGATG TACCCAACTT 1861 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1921 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1981 CTTGTGGAAA GGACGATTTG CGCCCGGTCT CGGCCTCAGT ACGCGTTAAG TCgacaatca 2041 acctctggat tacaaaattt gtgaaagatt