Construct: ORF TRCN0000467331

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011072.1_s317c1
Derived from:
ccsbBroadEn_12588
DNA Barcode:
ATTAGTGATGACCTCCACCAATAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C3orf52 (79669)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467331
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79669 C3orf52 chromosome 3 open reading f... NM_024616.2 69.1% 69.1% 1_201del
2 human 79669 C3orf52 chromosome 3 open reading f... XR_924171.3 4.8% 1_260del;489G>A;711_9214del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
516
ORF length:
450
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat catcaccTCC ATTTTCCTAG GTGTCATTAC AGTGATCATC ATAGGCTTAT
121GTCTTGCTGC AGTAACTTAT GTTGATGAAG ATGAAAATGA AATACTTGAA TTATCATCAA
181ACAAAACATT CTTCATCATG CTGAAGATTC CAGAGGAGTG TGTTGCTGAA GAGGAATTGC
241CTCACCTGCT CACCGAAAGG CTCACAGATG TGTACAGTAC ATCGCCCTCT CTGAGTCGTT
301ATTTTACTTC AGTTGAAATA GTGGACTTCA GTGGTGAAAA TGCCACAGTA ACGTATGACC
361TGCAATTTGG GGTTCCATCA GATGATGAAA ATTTTATGAA GTATATGATG AGTGAGGAGT
421TGGTGCTGGG CATTTTGCTA CAGGATTTCC GTGATCAGAA TATACCTGGT TGTGAGAGTC
481TGGGGCTTGA TCCAACATCC CTCTTGCTCT ATGAATGCCC AACTTTCTTG TACAAAGTGG
541TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
601CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
661AATTAGTGAT GACCTCCACC AATATACGCG TTAAGTCgac aatcaacctc tggattacaa
721aatttgtgaa agatt

Download FASTA (ORF) (Full)