Transcript: Human XR_924171.3

PREDICTED: Homo sapiens chromosome 3 open reading frame 52 (C3orf52), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
C3orf52 (79669)
Length:
9214
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_924171.3
NBCI Gene record:
C3orf52 (79669)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_924171.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000369896 CCCTGGAGCTCCTGTAATAAG pLKO_005 213 3UTR 100% 13.200 18.480 N C3orf52 n/a
2 TRCN0000364915 GTAACGTATGACCTGCAATTT pLKO_005 543 3UTR 100% 13.200 18.480 N C3orf52 n/a
3 TRCN0000364850 AGTGATCATCATAGGCTTATG pLKO_005 296 3UTR 100% 10.800 7.560 N C3orf52 n/a
4 TRCN0000369895 CAACATCCCTCTTGCTCTATG pLKO_005 688 3UTR 100% 10.800 7.560 N C3orf52 n/a
5 TRCN0000377342 GACAAGGTCTTCCCTTCTTTG pLKO_005 153 3UTR 100% 10.800 7.560 N C3orf52 n/a
6 TRCN0000144273 CAGTTGAAATAGTGGACTTCA pLKO.1 505 3UTR 100% 4.950 3.465 N C3orf52 n/a
7 TRCN0000145442 GATCAGAATATACCTGGTTGT pLKO.1 648 3UTR 100% 4.050 2.835 N C3orf52 n/a
8 TRCN0000143816 GCTTATGTCTTGCTGCAGTAA pLKO.1 310 3UTR 100% 4.950 2.970 N C3orf52 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_924171.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12588 pDONR223 100% 4.8% None 1_260del;489G>A;711_9214del n/a
2 ccsbBroad304_12588 pLX_304 0% 4.8% V5 1_260del;489G>A;711_9214del n/a
3 TRCN0000467331 ATTAGTGATGACCTCCACCAATAT pLX_317 95.5% 4.8% V5 1_260del;489G>A;711_9214del n/a
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