Construct: ORF TRCN0000467397

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004713.1_s317c1
Derived from:
ccsbBroadEn_11832
DNA Barcode:
TTTCTTTCTTCATTCCGACATTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCOLCE2 (26577)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467397
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26577 PCOLCE2 procollagen C-endopeptidase... NM_013363.4 66.5% 66.5% 829_1245del
2 mouse 76477 Pcolce2 procollagen C-endopeptidase... NM_029620.2 56.7% 58.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
894
ORF length:
828
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttgtcatgag gggcgcgaac gcctgggcgc cactctgcct gctgctggct gccgccaccc
121agctctcgcg gcagcagtcc ccagagagac ctgttttcac atgtggtggc attcttactg
181gagagtctgg atttattggc agtgaaggtt ttcctggagt gtaccctcca aatagcaaat
241gtacttggaa aatcacagtt cccgaaggaa aagtagtcgt tctcaatttc cgattcatag
301acctcgagag tgacaacctg tgccgctatg actttgtgga tgtgtacaat ggccatgcca
361atggccagcg cattggccgc ttctgtggca ctttccggcc tggagccctt gtgtccagtg
421gcaacaagat gatggtgcag atgatttctg atgccaacac agctggcaat ggcttcatgg
481ccatgttctc cgctgctgaa ccaaacgaaa gaggggatca gtattgtgga ggactccttg
541acagaccttc cggctctttt aaaaccccca actggccaga ccgggattac cctgcaggag
601tcacttgtgt gtggcacatt gtagccccaa agaatcagct tatagaatta aagtttgaga
661agtttgatgt ggagcgagat aactactgcc gatatgatta tgtggctgtg tttaatggcg
721gggaagtcaa cgatgctaga agaattggaa agtattgtgg tgatagtcca cctgcgccaa
781ttgtgtctga gagaaatgaa cttcTTATTC AGTTTTTATC AGACTTAAGT TTAACTGCAG
841ATGGGTTTAT TGGTCACTAC ATATTCAGGC CAAAAAAACT GCCTACAACT ACATACCCAA
901CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
961ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1021TATCTTGTGG AAAGGACGAT TTCTTTCTTC ATTCCGACAT TTTACGCGTT AAGTCgacaa
1081tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)