Construct: ORF TRCN0000467408
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014463.1_s317c1
- Derived from:
- ccsbBroadEn_13552
- DNA Barcode:
- TGTCAGCAGAATTGCACCCACGAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YIPF7 (285525)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467408
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285525 | YIPF7 | Yip1 domain family member 7 | NM_182592.2 | 46.2% | 42.7% | 349_350insAAGAT;392_840del |
| 2 | human | 285525 | YIPF7 | Yip1 domain family member 7 | XM_011513679.2 | 40.7% | 37.6% | 189_302del;463_464insAAGAT;506_954del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 465
- ORF length:
- 396
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggatttgctt aaaatttctc acacaaagct acatttactg gaggaTCTTT 121 CTATAAAAAA TAAACAGAGG ATGTCAAACT TGGCACAATT TGACTCTGAT TTTTACCAAT 181 CTAATTTTAC TATTGATAAC CAGGAGCAGA GTGGTAATGA CTCTAATGCC TATGGAAATC 241 TTTATGGATC TAGAAAACAA CAAGCTGGTG AGCAGCCTCA GCCTGCCTCC TTTGTTCCAT 301 CAGAGATGCT CATGTCATCG GGTTACGCAG GACAATTTTT TCAGCCAGCA TCCAACTCAG 361 ATTATTATTC ACAATCTCCT TACATTGACA GTTTTGATGA AGAGCCTCCT TTGCTAGAAG 421 ATAAGAACTT GGAATCCATT TTGATCACAT ATGGCAAAAA ACTTTTGCCA ACTTTCTTGT 481 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 541 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 601 GAAAGGACGA TGTCAGCAGA ATTGCACCCA CGAGACGCGT TAAGTCgaca atcaacctct 661 ggattacaaa atttgtgaaa gatt