Construct: ORF TRCN0000467541

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015592.1_s317c1
Derived from:
ccsbBroadEn_14669
DNA Barcode:
CTACTCATTGAAATTAGCGAACCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXA3 (3200)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467541
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3200 HOXA3 homeobox A3 NM_030661.4 100% 100%
2 human 3200 HOXA3 homeobox A3 NM_153631.2 100% 100%
3 human 3200 HOXA3 homeobox A3 XM_005249730.2 100% 100%
4 human 3200 HOXA3 homeobox A3 XM_005249731.2 100% 100%
5 human 3200 HOXA3 homeobox A3 XM_005249732.4 100% 100%
6 human 3200 HOXA3 homeobox A3 XM_006715715.2 100% 100%
7 human 3200 HOXA3 homeobox A3 XM_011515343.3 100% 100%
8 mouse 15400 Hoxa3 homeobox A3 NM_010452.3 88.4% 93.4% (many diffs)
9 mouse 15400 Hoxa3 homeobox A3 XM_011241225.2 88.4% 93.4% (many diffs)
10 mouse 15400 Hoxa3 homeobox A3 XM_017321402.1 88.4% 93.4% (many diffs)
11 mouse 15400 Hoxa3 homeobox A3 XM_017321403.1 88.4% 93.4% (many diffs)
12 mouse 15400 Hoxa3 homeobox A3 XM_017321404.1 88.4% 93.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1395
ORF length:
1329
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca aaaagcgacc tactacgaca gctcggcgat ctacggtggc tacccctacc
121aggcagccaa cgggttcgct tataatgcca atcagcagcc gtacccggcg tccgccgctt
181tgggcgccga cggcgagtac caccgacccg cctgctccct ccagtctccc tccagcgccg
241ggggccaccc caaggcacac gaactgagtg aggcgtgcct gcgcaccctg agcgccccac
301ctagccagcc tccaagcctg ggagagccgc ccctgcaccc gccgccgccc caggccgcgc
361cccctgcccc acagccgcct cagcccgcac ctcagccccc tgcacctacc cctgccgcgc
421ccccgcctcc ctcttctgcc tcccctcctc agaatgccag caacaaccct acccctgcca
481acgcggccaa gagccccctg ctcaactcac ccacagtggc caaacaaatc ttcccctgga
541tgaaagagtc tcgacaaaac acaaagcaga aaaccagcag ctccagctca ggcgaaagct
601gcgctggcga caagagcccg ccggggcagg cttcgtccaa gcgcgcgcgc acggcctaca
661cgagcgcgca gctggtggag ctggagaaag agttccactt caaccgctac ctgtgccggc
721cgcgccgggt ggagatggcc aatctgctga acctcactga gcgccagatc aagatctggt
781tccagaatcg ccgcatgaag tacaaaaagg atcagaaggg caagggcatg ctaacgtcat
841cggggggcca gtctccaagt cgcagccccg tgccccccgg agccggtggc tatctgaact
901ctatgcattc gctggtcaac agcgtcccgt atgagcccca gtcgcccccg cccttctcca
961agccccccca gggtaccTAC GGGCTGCCCC CCGCCTCCTA CCCTGCGTCC CTGCCCAGCT
1021GCGCACCCCC GCCACCCCCA CAGAAGCGCT ACACGGCGGC AGGGGCGGGC GCAGGGGGCA
1081CCCCCGACTA TGACCCGCAC GCTCATGGCC TGCAGGGCAA CGGCAGCTAT GGGACCCCAC
1141ACATACAGGG AAGCCCCGTC TTCGTGGGGG GCAGCTATGT GGAGCCCATG AGCAACTCCG
1201GGCCAGCCCT CTTTGGTCTA ACTCACCTCC CCCACGCTGC CTCGGGCGCC ATGGACTATG
1261GGGGTGCCGG GCCGCTGGGC AGCGGCCACC ACCACGGGCC GGGGCCTGGG GAGCCGCACC
1321CCACCTACAC GGACCTTACC GGCCACCATC CTTCTCAGGG AAGAATTCAG GAAGCACCCA
1381AGCTCACCCA CCTGTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1441CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1501TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CTACTCATTG AAATTAGCGA
1561ACCTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)