Construct: ORF TRCN0000467567

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006464.1_s317c1
Derived from:
ccsbBroadEn_03415
DNA Barcode:
TAGCGCTTCTCAGTGGAGTGGGCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GFOD1 (54438)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467567
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54438 GFOD1 glucose-fructose oxidoreduc... NM_018988.4 100% 100%
2 human 54438 GFOD1 glucose-fructose oxidoreduc... NM_001242628.1 73.5% 73.5% 0_1ins309
3 human 54438 GFOD1 glucose-fructose oxidoreduc... NM_001242630.1 73.5% 73.5% 0_1ins309
4 human 54438 GFOD1 glucose-fructose oxidoreduc... XM_011514699.2 73.5% 73.5% 0_1ins309
5 human 54438 GFOD1 glucose-fructose oxidoreduc... NM_001242629.1 28.5% 23.8% (many diffs)
6 mouse 328232 Gfod1 glucose-fructose oxidoreduc... NM_001033399.4 90.7% 98.2% (many diffs)
7 mouse 328232 Gfod1 glucose-fructose oxidoreduc... XM_006516932.3 66.5% 71.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1239
ORF length:
1170
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcttcccggg gtgggcgtgt tcggcaccag cctcacggcc cgtgtcatca
121tcccgctgct gaaagacgag ggcttcgcgg tgaaggcgct gtggggccgc acgcaggaag
181aagcggagga gctggccaag gagatgagtg tccccttcta cactagccgc attgatgagg
241tgctgctgca tcaggacgtg gacttggtgt gcattaacct gccgccgccc ctcaccagac
301agatcgctgt caaaacccta ggcatcggca agaacgtcat ctgcgaccgc acggccacgc
361cgctggacgc tttccgcatg acctcggccg cccactacta ccccaagctc atgagcatca
421tgggcaacgt gctgcgcttc ctgccggctt tcgtgcgcat gaagcagctg atcgaggagg
481gctacgtggg cgagccgctg gtgtgtgagg tgcaggtgca cggcggcagc ctgctgggca
541agaagtacaa ctggagctgc gacgacttga tgggcggcgg cggcctgcac tccgtgggca
601cctacatcat cgacctgctc accttcctca ccggccaaaa ggccgtcaag gtccacgggc
661tgctcaagac cttcgtgaag cagactgacc acatcaaggg catccgacag atcaccagcg
721atgacttctg caccttccag atggtgctgg agggcggggt gtgctgcacc gtcaccctca
781acttcaacgt gcccggcgag ttcaagcagg atgtcactgt ggtgggcTCA GCCGGGCGCC
841TGCTGGCCGT GGGCACCGAC CTGTACGGGC AGCGCAACAG CGCCCCGGAG CAGGAGCTGC
901TGGTGCAGGA CGCCACGCCG GTGAGCAACT CCCTGCTTCC GGAGAAGGCC TTCAGCGACA
961TCCCCTCGCC CTACCTGCGC GGCACCATCA AGATGATGCA GGCGGTGCGC CAGGCCTTCC
1021AGGACCAGGA CGACCGGCGC ACGTGGGATG GGCGGCCCCT CACCATGGCC GCCACCTTCG
1081ACGACTGCCT GTATGCCTTG TGCGTGGTGG ACACCATCAA GAGGTCCAGC CAGACGGGCG
1141AGTGGCAGAA CATTGCCATC ATGACCGAGG AGCCGGAGCT GAGCCCCGCC TACCTGATCA
1201GCGAGGCCAT GCGCCGCAGC AGGATGTCCC TCTACTGTTT GCCAACTTTC TTGTACAAAG
1261TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1321GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1381ACGATAGCGC TTCTCAGTGG AGTGGGCTAC GCGTTAAGTC gacaatcaac ctctggatta
1441caaaatttgt gaaagatt

Download FASTA (ORF) (Full)