Construct: ORF TRCN0000467616
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015466.1_s317c1
- Derived from:
- ccsbBroadEn_14176
- DNA Barcode:
- AACCAAATCAATTGACATCTCTCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TASOR2 (54906)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467616
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54906 | TASOR2 | transcription activation su... | NM_001321785.1 | 31.5% | 31.4% | 1_4824del;6968G>A;7043A>C |
| 2 | human | 54906 | TASOR2 | transcription activation su... | NM_001321783.1 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 3 | human | 54906 | TASOR2 | transcription activation su... | NM_001321784.1 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 4 | human | 54906 | TASOR2 | transcription activation su... | NM_017782.4 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 5 | human | 54906 | TASOR2 | transcription activation su... | XM_005252475.4 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 6 | human | 54906 | TASOR2 | transcription activation su... | XM_005252480.5 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 7 | human | 54906 | TASOR2 | transcription activation su... | XM_005252481.5 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 8 | human | 54906 | TASOR2 | transcription activation su... | XM_005252482.3 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 9 | human | 54906 | TASOR2 | transcription activation su... | XM_011519525.3 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 10 | human | 54906 | TASOR2 | transcription activation su... | XM_017016363.2 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 11 | human | 54906 | TASOR2 | transcription activation su... | XM_017016365.2 | 30.4% | 30.4% | 1_5067del;7211G>A;7286A>C |
| 12 | human | 54906 | TASOR2 | transcription activation su... | XM_005252476.5 | 29.3% | 29.3% | 1_5340del;7484G>A;7559A>C |
| 13 | human | 54906 | TASOR2 | transcription activation su... | XM_017016364.2 | 29.2% | 29.1% | 1_5376del;7520G>A;7595A>C |
| 14 | human | 54906 | TASOR2 | transcription activation su... | XM_011519521.3 | 28.8% | 28.7% | 1_5478del;7622G>A;7697A>C |
| 15 | human | 54906 | TASOR2 | transcription activation su... | XM_011519522.3 | 28.8% | 28.7% | 1_5478del;7622G>A;7697A>C |
| 16 | human | 54906 | TASOR2 | transcription activation su... | XM_017016362.2 | 28.7% | 28.6% | 1_5514del;7658G>A;7733A>C |
| 17 | human | 54906 | TASOR2 | transcription activation su... | XM_011519520.3 | 28.3% | 28.2% | 1_5622del;7766G>A;7841A>C |
| 18 | human | 54906 | TASOR2 | transcription activation su... | XM_011519519.3 | 28% | 28% | 1_5682del;7826G>A;7901A>C |
| 19 | human | 54906 | TASOR2 | transcription activation su... | XM_017016361.1 | 28% | 28% | 1_5682del;7826G>A;7901A>C |
| 20 | human | 54906 | TASOR2 | transcription activation su... | XM_011519518.3 | 27.7% | 27.7% | 1_5772del;7916G>A;7991A>C |
| 21 | human | 54906 | TASOR2 | transcription activation su... | XM_005252474.4 | 27.7% | 27.6% | 1_5787del;7931G>A;8006A>C |
| 22 | human | 54906 | TASOR2 | transcription activation su... | XM_011519517.3 | 27.5% | 27.4% | 1_5850del;7994G>A;8069A>C |
| 23 | human | 54906 | TASOR2 | transcription activation su... | XM_011519515.3 | 27.2% | 27.2% | 1_5925del;8069G>A;8144A>C |
| 24 | human | 54906 | TASOR2 | transcription activation su... | XM_011519516.2 | 27.2% | 27.2% | 1_5925del;8069G>A;8144A>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2289
- ORF length:
- 2223
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc cagtttgctt aagaatggtg agcctgaagc tgagttacat aaagaaacca 121 caggtccagg cactgctggc cctcagtcca acaccacatc ttctctaaaa ggtgaacgca 181 aagccatcca cacgctgcaa gatgtgtcaa catgtgaaac aaaggagcta ttgaatgtcg 241 gggtttcctc cctttgtgct ggtccctacc aaaatacagc agacaccaag gaaaacctca 301 gtaaagagcc tttggcctcc tttgtttcag aatcctttga tacttctgtt tgtggaatag 361 ccacagagca cgtagaaatt gagaacagtg gggaggggct cagggctgag gctggttctg 421 aaaccctagg cagagatgga gaggtcggtg tgaattccga catgcactat gaactctctg 481 gagattctga tctagacctg cttggtgatt gtagaaatcc cagactggat ttggaggatt 541 cttatacttt aagaggtagt tacaccagga aaaaagatgt tcccacagat ggctatgagt 601 cgtcgttgaa cttccacaac aacaaccaag aggactgggg ctgctctagc tgggttccag 661 gcatggagac gagcctccct cccgggcact ggactgctgc ggtaaagaaa gaagagaagt 721 gtgtgccgcc ttacgtccaa atccgagatc tccacgggat cctcaggact tacgccaact 781 tctctataac aaaagaactc aaagatacca tgagaacttc acacggcctg aggaggcacc 841 cgagtttcag tgcaaactgt ggcctgccca gctcctggac aagcacttgg caggtggcag 901 acgacctcac ccagaacact ttagacctgg agtatctgcg ttttgcacat aaactaaaac 961 agaccataaa gaatggggat tctcagcatt ctgcctcctc tgccaatgtc tttccaaagg 1021 agtcaccaac ccagatctcc attggtgctt tcccttcgac aaaaatctct gaggccccat 1081 ttctgcatcc tgcacctagg agcagaagcc cccttctggt aacagttgtg gagtcagatc 1141 ccagaccaca ggggcagccc aggagaggct acacagccag cagtctggac agctcttcct 1201 cttggagaga gagatgtagt cataatagag atcttagaaa ttctcaaaga aatcacactg 1261 tttcattcca cctcaacaaa ctgaaataca acagtactgt gaaggaatct cggaatgata 1321 tttcacttat tctcaatgag tatgctgaat tcaacaaggt gatgaagaat agcaaccaat 1381 tcattttcca agacaaagag ctaaatgatg tttctggaga agccactgct caagagatgt 1441 atctgccttt cccaggacgg tcagcctcct atgaagacat aatcatagac gtgtgcacca 1501 atttgcacgt caaactaaga agtgttgtga aagaggcttg taaaagtacc ttcctgttct 1561 accttgtcga aacagaagac aaatcattct ttgtaagaac aaagaacctt ctgaggaaag 1621 gaggccatac agaaattgaa cctcagcact tctgtcaagc tttccacaga gagaatgata 1681 cactaatcat catcatcaga aatgaagata tatcatcaca tttgcatcag attccttctt 1741 tgctgaagct gaagcatttc cccagtgtca tctttgctgg agtagacagc cctggagatg 1801 ttcttgatca caccTACCAA GAACTGTTTC GTGCAGGAGG CTTTGTGATA TCAGATGACA 1861 AGATACTAGA AGCTGTAACA TTAGTTCAAC TGAAGGAAAT TATCAAAATC CTGGAAAAAC 1921 TAAATGGAAA TGGAAGATGG AAGTGGTTGC TTCACTACAG GGAAAATAAA AAGCTAAAAG 1981 AAGATGAAAG AGTGGATTCA ACTGCACATA AGAAGAACAT AATGTTGAAG TCATTTCAGA 2041 GTGCAAATAT CATTGAATTG CTTCATTATC ACCAGTGTGA CTCTCGATCA TCAACAAAAG 2101 CAGAAATTCT GAAATGTTTG CTAAACCTGC AAATTCAGCA TATTGATGCC AGGTTTGCTG 2161 TCCTCCTAAC AGACAAGCCT ACTATCCCCA GAGAAGTCTT TGAAAATAAT GGAATCCTTG 2221 TTACAGATGT AAATAACTTT ATAGAAAACA TAGAAAAAAT AGCAGCTCCA TTTAGGAGTA 2281 GCTCTTGGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 2341 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 2401 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAACCAA ATCAATTGAC ATCTCTCAAC 2461 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt