Construct: ORF TRCN0000467819

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012549.3_s317c1
Derived from:
ccsbBroadEn_08054
DNA Barcode:
TACCCCACCAGTGGGTCCTTGTAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EIF2AK1 (27102)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467819
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27102 EIF2AK1 eukaryotic translation init... NM_014413.4 99.8% 99.8% 918G>A;1877A>C
2 human 27102 EIF2AK1 eukaryotic translation init... NM_001134335.1 99.7% 99.6% 728_729insAGC;915G>A;1874A>C
3 human 27102 EIF2AK1 eukaryotic translation init... XM_024446718.1 66.8% 66.8% 0_1ins624;294G>A;1253A>C
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1956
ORF length:
1890
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca ggggggcaac tccggggtcc gcaagcgcga agaggagggc gacggggctg
121gggctgtggc tgcgccgccg gccatcgact ttcccgccga gggcccggac cccgaatatg
181acgaatctga tgttccagca gaaatccagg tgttaaaaga acccctacaa cagccaacct
241tcccttttgc agttgcaaac caactcttgc tggtttcttt gctggagcac ttgagccacg
301tgcatgaacc aaacccactt cgttcaagac aggtgtttaa gctactttgc cagacgttta
361tcaaaatggg gctgctgtct tctttcactt gtagtgacga gtttagctca ttgagactac
421atcacaacag agctattact cacttaatga ggtctgctaa agagagagtt cgtcaggatc
481cttgtgagga tatttctcgt atccagaaaa tcagatcaag ggaagtagcc ttggaagcac
541aaacttcacg ttacttaaat gaatttgaag aacttgccat cttaggaaaa ggtggatacg
601gaagagtata caaggtcagg aataaattag atggtcagta ttatgcaata aaaaaaatcc
661tgattaaggg tgcaactaaa acagtttgca tgaaggtcct acgggaagtg aaggtgctgg
721caggtcttca gcaccccaat attgttggct atcacaccgc gtggatagaa catgttcatg
781tgattcagcc acgagcagac agagctgcca ttgagttgcc atctctggaa gtgctctccg
841accaggaaga ggacagagag caatgtggtg ttaaaaatga tgaaagtagc agctcatcca
901ttatctttgc tgagcccacc ccagaaaaag aaaaacgctt tggagaatct gacactgaaa
961atcagaataa caagtcggtg aaatacacca ccaatttagt cataagagaa tctggtgaac
1021ttgagtcgac cctggagctc caggaaaatg gcttggctgg tttgtctgcc agttcaattg
1081tggaacagca gctgccactc aggcgtaatt cccacctaga ggagagtttc acatccaccg
1141aagaatcttc cgaagaaaat gtcaactttt tgggtcagac agaggcacag taccacctga
1201tgctgcacat ccagatgcag ctgtgtgagc tctcgctgtg ggattggata gtcgagagaa
1261acaagcgggg ccgggagtat gtggacgagt ctgcctgtcc ttatgttatg gccaatgttg
1321caacaaaaat ttttcaagaa ttggtagaag gtgtgtttta catacataac atgggaattg
1381tgcaccgaga tctgaagcca agaaatattt ttcttcatgg ccctgatcag caagtaaaaa
1441taggagactt tggtctggcc tgcacagaca tcctacagaa gaacacagac tggaccaaca
1501gaaacgggaa gagaacacca acacatacgt ccagagtggg tacttgtctg tacgcttcac
1561ccgaacagtt ggaaggatct gagtatgatg ccaagtcaga tatgtacagc ttgggtgtgg
1621tcctgctaga gctctttcag ccgtttggaa cagaaatgga gcgagcagaa gttctaacag
1681gtttaagaac tggtcagttg ccggaaTCCC TCCGTAAAAG GTGTCCAGTG CAAGCCAAGT
1741ATATCCAGCA CTTAACGAGA AGGAACTCAT CGCAGAGACC ATCTGCCATT CAGCTGCTGC
1801AGAGTGAACT TTTCCAAAAT TCTGGAAATG TTAACCTCAC CCTACAGATG AAGATAATAG
1861AGCAAGAAAA AGAAATTGCA GAACTAAAGA AGCAGCTAAA CCTCCTTTCT CAAGACAAAG
1921GGGTGAGGGA TGACGGAAAG GCTGGGGGCG TGGGATGCCC AACTTTCTTG TACAAAGTGG
1981TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
2041CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
2101ATACCCCACC AGTGGGTCCT TGTAAACGCG TTAAGTCgac aatcaacctc tggattacaa
2161aatttgtgaa agatt

Download FASTA (ORF) (Full)