Construct: ORF TRCN0000467847
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013443.1_s317c1
- Derived from:
- ccsbBroadEn_13421
- DNA Barcode:
- TTGGGTCGGTTTGACCGCTATGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC162P (221262)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467847
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221262 | CCDC162P | coiled-coil domain containi... | NR_152435.1 | 8.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 654
- ORF length:
- 585
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gttcaaaact ctgccagaaa aggcagcttt taaagcctta aagcgaactc 121 tacaactgat agctcctctg catgatatcg tggcctacct tgtcagtttt gctaagcttg 181 gcaattgtcc agcatgtttt gaatttcctc gaagtcccaa ccctttgaga ggtgactggg 241 gaggaactga gggcattggg tctgagcttc aagagctgca gaacatgatt gacagcctcc 301 agagccccca agaccctatc cgggtggccc aggcactcct ccTCCGGAGG GAGGTTATAT 361 TTTTGCAGTT TGACGCTGCA GTAAGGCATC TCATCCGAAG AACATTTTTG GCAGCTGGAA 421 ATGTTCCTGC CTACCAGTCT GTCACAGACG GCATGTGCCA TGGGCTACCA GCACTGAGCA 481 ACTCTCTCAG GAAGAGCATT TTTGCCTCAC AGCTCAGCCT GCCCCAGCCA CTGGATCCAC 541 GGAGCCTCCA GGCATTTGAG CTGTTTCCTT GGAGAGCATT TCTGGAAGAT GGAGGACCAT 601 TCCCAGTTAT GAGTAACAGC CCAGATACCC TAGAATATAA TATGCAGGTA GGATTGCCAA 661 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 721 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 781 TATCTTGTGG AAAGGACGAT TGGGTCGGTT TGACCGCTAT GTCACGCGTT AAGTCgacaa 841 tcaacctctg gattacaaaa tttgtgaaag att