Construct: ORF TRCN0000467996
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005296.1_s317c1
- Derived from:
- ccsbBroadEn_05955
- DNA Barcode:
- TAGGTGTGCCCTTATCTACGGTGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD6 (923)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467996
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 923 | CD6 | CD6 molecule | NM_006725.5 | 99.8% | 99.5% | (many diffs) |
| 2 | human | 923 | CD6 | CD6 molecule | XM_011545360.2 | 99.6% | 99.4% | (many diffs) |
| 3 | human | 923 | CD6 | CD6 molecule | XM_006718738.2 | 95% | 94.7% | (many diffs) |
| 4 | human | 923 | CD6 | CD6 molecule | XM_006718739.2 | 93.6% | 93.2% | (many diffs) |
| 5 | human | 923 | CD6 | CD6 molecule | XM_006718740.2 | 93.5% | 93.1% | (many diffs) |
| 6 | human | 923 | CD6 | CD6 molecule | NM_001254750.2 | 89.7% | 89.5% | (many diffs) |
| 7 | human | 923 | CD6 | CD6 molecule | XM_006718741.2 | 88.8% | 88.4% | (many diffs) |
| 8 | human | 923 | CD6 | CD6 molecule | NM_001254751.2 | 88.4% | 88% | (many diffs) |
| 9 | human | 923 | CD6 | CD6 molecule | XM_011545362.2 | 84.6% | 84.4% | (many diffs) |
| 10 | human | 923 | CD6 | CD6 molecule | NR_045638.2 | 57.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2070
- ORF length:
- 2004
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtg gctcttcttc gggatcactg gattgctgac ggcagccctc tcaggtcatc 121 catctccagc cccacctgac cagctcaaca ccagcagtgc agagagtgag ctctgggagc 181 caggggagcg gcttccggtc cgtctgacaa acgggagcag cagctgcagc gggacggtgg 241 aggtgcggct cgaggcgtcc tgggagcccg cgtgcggggc gctctgggac agccgcgccg 301 ccgaggccgt gtgccgagca ctgggctgcg gcggggcgga ggccgcctct cagctcgccc 361 cgccgacccc tgagctgccg cccccgcctg cagccgggaa caccagcgta gcagctaatg 421 ccactctggc cggggcgccc gccctcctgt gcagcggcgc cgagtggcgg ctctgcgagg 481 tggtggagca cgcgtgccgc agcgacggga ggcgggcccg tgtcacctgt gcagagaacc 541 gcgcgctgcg cctggtggac ggtggcggcg cctgcgccgg ccgcgtggag atgctggagc 601 atggcgagtg gggatcagtg tgcgatgaca cttgggacct ggaggacgcc cacgtggtgt 661 gcaggcaact gggctgcggc tgggcagtcc aggccctgcc cggcttgcac ttcatgcccg 721 gccgcgggcc tatccaccgg gaccaggtga actgctcggg ggccgaagct tacctgtggg 781 actgcccggg gctgccagga cagcactact gcggccacaa agaggacgcg ggcgtggtgt 841 gctcagagca ccagtcctgg cgcctgacag ggggcgctga ccgctgcgag gggcaggtgg 901 aggtacactt ccgaggggtc tggaacacag tgtgtgacag tgagtggtac ccatcggagg 961 ccaaggtgct ctgccagtcc ttgggctgtg gaactgcggt tgagaggccc aaggggctgc 1021 cccactcctt gtccggcagg atgtactact catgcaatgg ggaggagctc accctctcca 1081 actgctcctg gcggttcaac aactccaacc tctgcagcca gtcgctggca gccagggtcc 1141 tctgctcagc ttcccggagt ttgcacaatc tgtccactcc cgaagtccct gcaagtgttc 1201 agacagtcac tatagaatct tctgtgacag tgaaaataga gaacaaggaa tctcgggagc 1261 taatgctcct catcccctcc atcgttctgg gaattctcct ccttggctcc ctcatcttca 1321 tagccttcat cctcttgaga attaaaggaa aatatgccct ccccgtaatg gtgaaccacc 1381 agcacctacc caccaccatc ccggcaggga gcaatagcta tcaaccggtc cccatcacca 1441 tccccaaaga agttttcatg ctgcccatcc aggtccaggc cccgccccct gaggactcag 1501 actctggctc ggactcagac tatgagcact atgacttcag cgcccagcct cctgtggccc 1561 tgaccacctt ctacaattcc cagcggcatc gggtcacaga tgaggaggtc cagcaaagca 1621 ggttccagat gccacccttg gaggaaggac ttgaagagtt gcatgcctcc cacatcccaa 1681 ctgccaaccc tggacactgc attacagacc cgccatccct gggccctcag tatcacccga 1741 ggagcaacag tgagtcgagc acctcttcgg gggaggatta ctgcaatagt cccaaaagca 1801 agctgcctcc atggaacccc caggtgtttt cttcagagag gagttccttc ctggagcagc 1861 CCCCAAACTT GGAGCTGGCC AGCACCCAGC CAGCCTTTTC AGCAGGGCCC CCGGCTGATG 1921 ACAGCTCCAG CACCTCATCC GGGGAGTGGT ACCAGAACTT CCAGCCACCA CCCCAGCCCC 1981 CTTCGGAGGA GCAGTTTGGC TGTCCAGGGT CCCCCAGCCC TCAGCCTGAC TCCACCGACA 2041 ACGATGACTA CGATGACATC AGCGCAGCCT ACCCAACTTT CTTGTACAAA GTGGTTGATA 2101 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 2161 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATAGGT 2221 GTGCCCTTAT CTACGGTGCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 2281 tgaaagatt