Construct: ORF TRCN0000467996

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005296.1_s317c1
Derived from:
ccsbBroadEn_05955
DNA Barcode:
TAGGTGTGCCCTTATCTACGGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD6 (923)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467996
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 923 CD6 CD6 molecule NM_006725.5 99.8% 99.5% (many diffs)
2 human 923 CD6 CD6 molecule XM_011545360.2 99.6% 99.4% (many diffs)
3 human 923 CD6 CD6 molecule XM_006718738.2 95% 94.7% (many diffs)
4 human 923 CD6 CD6 molecule XM_006718739.2 93.6% 93.2% (many diffs)
5 human 923 CD6 CD6 molecule XM_006718740.2 93.5% 93.1% (many diffs)
6 human 923 CD6 CD6 molecule NM_001254750.2 89.7% 89.5% (many diffs)
7 human 923 CD6 CD6 molecule XM_006718741.2 88.8% 88.4% (many diffs)
8 human 923 CD6 CD6 molecule NM_001254751.2 88.4% 88% (many diffs)
9 human 923 CD6 CD6 molecule XM_011545362.2 84.6% 84.4% (many diffs)
10 human 923 CD6 CD6 molecule NR_045638.2 57.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2070
ORF length:
2004
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg gctcttcttc gggatcactg gattgctgac ggcagccctc tcaggtcatc
121catctccagc cccacctgac cagctcaaca ccagcagtgc agagagtgag ctctgggagc
181caggggagcg gcttccggtc cgtctgacaa acgggagcag cagctgcagc gggacggtgg
241aggtgcggct cgaggcgtcc tgggagcccg cgtgcggggc gctctgggac agccgcgccg
301ccgaggccgt gtgccgagca ctgggctgcg gcggggcgga ggccgcctct cagctcgccc
361cgccgacccc tgagctgccg cccccgcctg cagccgggaa caccagcgta gcagctaatg
421ccactctggc cggggcgccc gccctcctgt gcagcggcgc cgagtggcgg ctctgcgagg
481tggtggagca cgcgtgccgc agcgacggga ggcgggcccg tgtcacctgt gcagagaacc
541gcgcgctgcg cctggtggac ggtggcggcg cctgcgccgg ccgcgtggag atgctggagc
601atggcgagtg gggatcagtg tgcgatgaca cttgggacct ggaggacgcc cacgtggtgt
661gcaggcaact gggctgcggc tgggcagtcc aggccctgcc cggcttgcac ttcatgcccg
721gccgcgggcc tatccaccgg gaccaggtga actgctcggg ggccgaagct tacctgtggg
781actgcccggg gctgccagga cagcactact gcggccacaa agaggacgcg ggcgtggtgt
841gctcagagca ccagtcctgg cgcctgacag ggggcgctga ccgctgcgag gggcaggtgg
901aggtacactt ccgaggggtc tggaacacag tgtgtgacag tgagtggtac ccatcggagg
961ccaaggtgct ctgccagtcc ttgggctgtg gaactgcggt tgagaggccc aaggggctgc
1021cccactcctt gtccggcagg atgtactact catgcaatgg ggaggagctc accctctcca
1081actgctcctg gcggttcaac aactccaacc tctgcagcca gtcgctggca gccagggtcc
1141tctgctcagc ttcccggagt ttgcacaatc tgtccactcc cgaagtccct gcaagtgttc
1201agacagtcac tatagaatct tctgtgacag tgaaaataga gaacaaggaa tctcgggagc
1261taatgctcct catcccctcc atcgttctgg gaattctcct ccttggctcc ctcatcttca
1321tagccttcat cctcttgaga attaaaggaa aatatgccct ccccgtaatg gtgaaccacc
1381agcacctacc caccaccatc ccggcaggga gcaatagcta tcaaccggtc cccatcacca
1441tccccaaaga agttttcatg ctgcccatcc aggtccaggc cccgccccct gaggactcag
1501actctggctc ggactcagac tatgagcact atgacttcag cgcccagcct cctgtggccc
1561tgaccacctt ctacaattcc cagcggcatc gggtcacaga tgaggaggtc cagcaaagca
1621ggttccagat gccacccttg gaggaaggac ttgaagagtt gcatgcctcc cacatcccaa
1681ctgccaaccc tggacactgc attacagacc cgccatccct gggccctcag tatcacccga
1741ggagcaacag tgagtcgagc acctcttcgg gggaggatta ctgcaatagt cccaaaagca
1801agctgcctcc atggaacccc caggtgtttt cttcagagag gagttccttc ctggagcagc
1861CCCCAAACTT GGAGCTGGCC AGCACCCAGC CAGCCTTTTC AGCAGGGCCC CCGGCTGATG
1921ACAGCTCCAG CACCTCATCC GGGGAGTGGT ACCAGAACTT CCAGCCACCA CCCCAGCCCC
1981CTTCGGAGGA GCAGTTTGGC TGTCCAGGGT CCCCCAGCCC TCAGCCTGAC TCCACCGACA
2041ACGATGACTA CGATGACATC AGCGCAGCCT ACCCAACTTT CTTGTACAAA GTGGTTGATA
2101TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
2161CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATAGGT
2221GTGCCCTTAT CTACGGTGCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
2281tgaaagatt

Download FASTA (ORF) (Full)