Transcript: Human NM_006725.5

Homo sapiens CD6 molecule (CD6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-13
Taxon:
Homo sapiens (human)
Gene:
CD6 (923)
Length:
3252
CDS:
187..2193

Additional Resources:

NCBI RefSeq record:
NM_006725.5
NBCI Gene record:
CD6 (923)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006725.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000057605 GCAGGGAGCAATAGCTATCAA pLKO.1 1525 CDS 100% 5.625 7.875 N CD6 n/a
2 TRCN0000430521 CCGACAACGATGACTACGATG pLKO_005 2156 CDS 100% 4.050 5.670 N CD6 n/a
3 TRCN0000423586 CCGGAGTTTGCACAATCTGTC pLKO_005 1275 CDS 100% 4.050 5.670 N CD6 n/a
4 TRCN0000057606 CCCTCCATCGTTCTGGGAATT pLKO.1 1396 CDS 100% 0.000 0.000 N CD6 n/a
5 TRCN0000057603 GCGCTTTGATTGCCTGAGTTT pLKO.1 2561 3UTR 100% 4.950 3.960 N CD6 n/a
6 TRCN0000416633 ACACCAGCGTAGCAGCTAATG pLKO_005 521 CDS 100% 10.800 7.560 N CD6 n/a
7 TRCN0000426394 AGGAATCTCGGGAGCTAATGC pLKO_005 1367 CDS 100% 4.950 3.465 N CD6 n/a
8 TRCN0000429277 CCGGCAGGATGTACTACTCAT pLKO_005 1154 CDS 100% 4.950 3.465 N CD6 n/a
9 TRCN0000057604 CCTCTTGAGAATTAAAGGAAA pLKO.1 1452 CDS 100% 4.950 3.465 N CD6 n/a
10 TRCN0000436296 TAGGGTCTGCTGAGCTGTTGT pLKO_005 2663 3UTR 100% 4.950 3.465 N CD6 n/a
11 TRCN0000431438 AGTATCACCCGAGGAGCAACA pLKO_005 1850 CDS 100% 4.050 2.835 N CD6 n/a
12 TRCN0000057607 GATTACTGCAATAGTCCCAAA pLKO.1 1897 CDS 100% 4.050 2.835 N CD6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006725.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05955 pDONR223 100% 99.8% 99.5% None (many diffs) n/a
2 ccsbBroad304_05955 pLX_304 0% 99.8% 99.5% V5 (many diffs) n/a
3 TRCN0000467996 TAGGTGTGCCCTTATCTACGGTGC pLX_317 10.8% 99.8% 99.5% V5 (many diffs) n/a
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