Construct: ORF TRCN0000468035

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005337.1_s317c1
Derived from:
ccsbBroadEn_00345
DNA Barcode:
CAGACTTTCTCATAGATTAGGAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC31A1 (1317)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468035
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1317 SLC31A1 solute carrier family 31 me... NM_001859.4 100% 100%
2 mouse 20529 Slc31a1 solute carrier family 31, m... NM_175090.4 86.8% 88.3% (many diffs)
3 mouse 20529 Slc31a1 solute carrier family 31, m... XM_006537711.2 86.8% 88.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
636
ORF length:
570
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tcattcccac catatgggga tgagctatat ggactccaac agtaccatgc
121aaccttctca ccatcaccca accacttcag cctcacactc ccatggtgga ggagacagca
181gcatgatgat gatgcctatg accttctact ttggctttaa gaatgtggaa cTACTGTTTT
241CCGGTTTGGT GATCAATACA GCTGGAGAAA TGGCTGGAGC TTTTGTGGCA GTGTTTTTAC
301TAGCAATGTT CTATGAAGGA CTCAAGATAG CCCGAGAGAG CCTGCTGCGT AAGTCACAAG
361TCAGCATTCG CTACAATTCC ATGCCTGTCC CAGGACCAAA TGGAACCATC CTTATGGAGA
421CACACAAAAC TGTTGGGCAA CAGATGCTGA GCTTTCCTCA CCTCCTGCAA ACAGTGCTGC
481ACATCATCCA GGTGGTCATA AGCTACTTCC TCATGCTCAT CTTCATGACC TACAACGGGT
541ACCTCTGCAT TGCAGTAGCA GCAGGGGCCG GTACAGGATA CTTCCTCTTC AGCTGGAAGA
601AGGCAGTGGT AGTGGATATC ACAGAGCATT GCCATTGCCC AACTTTCTTG TACAAAGTGG
661TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
721CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
781ACAGACTTTC TCATAGATTA GGAATACGCG TTAAGTCgac aatcaacctc tggattacaa
841aatttgtgaa agatt

Download FASTA (ORF) (Full)