Construct: ORF TRCN0000468210

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008002.1_s317c1
Derived from:
ccsbBroadEn_01329
DNA Barcode:
AAAACCTTCTTTATGTACGACGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTBP1 (5725)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468210
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5725 PTBP1 polypyrimidine tract bindin... NM_031991.4 100% 100%
2 human 5725 PTBP1 polypyrimidine tract bindin... XM_005259598.2 99.4% 99% 3_8delGCGTGC;11G>A;13A>G
3 human 5725 PTBP1 polypyrimidine tract bindin... NM_031990.4 96.5% 96.5% 892_948del
4 human 5725 PTBP1 polypyrimidine tract bindin... NM_002819.5 95.3% 95.3% 892_969del
5 human 5725 PTBP1 polypyrimidine tract bindin... XM_005259597.2 94.8% 94.4% (many diffs)
6 human 5725 PTBP1 polypyrimidine tract bindin... XR_244035.2 42.1% (many diffs)
7 human 5725 PTBP1 polypyrimidine tract bindin... XR_244034.2 41.2% (many diffs)
8 mouse 19205 Ptbp1 polypyrimidine tract bindin... NM_008956.3 86.8% 96.9% (many diffs)
9 mouse 19205 Ptbp1 polypyrimidine tract bindin... NM_001077363.2 82.7% 92.4% (many diffs)
10 mouse 19205 Ptbp1 polypyrimidine tract bindin... NM_001283013.1 80.7% 90% (many diffs)
11 mouse 19205 Ptbp1 polypyrimidine tract bindin... XR_380379.1 62.9% (many diffs)
12 mouse 19205 Ptbp1 polypyrimidine tract bindin... XR_001779485.1 41.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1659
ORF length:
1593
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga cggcattgtc ccagatatag ccgttggtac aaagcgggga tctgacgagc
121ttttctctac ttgtgtcact aacggaccgt ttatcatgag cagcaactcg gcttctgcag
181caaacggaaa tgacagcaag aagttcaaag gtgacagccg aagtgcaggc gtcccctcta
241gagtgatcca catccggaag ctccccatcg acgtcacgga gggggaagtc atctccctgg
301ggctgccctt tgggaaggtc accaacctcc tgatgctgaa ggggaaaaac caggccttca
361tcgagatgaa cacggaggag gctgccaaca ccatggtgaa ctactacacc tcggtgaccc
421ctgtgctgcg cggccagccc atctacatcc agttctccaa ccacaaggag ctgaagaccg
481acagctctcc caaccaggcg cgggcccagg cggccctgca ggcggtgaac tcggtccagt
541cggggaacct ggccttggct gcctcggcgg cggccgtgga cgcagggatg gcgatggccg
601ggcagagccc cgtgctcagg atcatcgtgg agaacctctt ctaccctgtg accctggatg
661tgctgcacca gattttctcc aagttcggca cagtgttgaa gatcatcacc ttcaccaaga
721acaaccagtt ccaggccctg ctgcagtatg cggaccccgt gagcgcccag cacgccaagc
781tgtcgctgga cgggcagaac atctacaacg cctgctgcac gctgcgcatc gacttttcca
841agctcaccag cctcaacgtc aagtacaaca atgacaagag ccgtgactac acacgcccag
901acctgccttc cggggacagc cagccctcgc tggaccagac catggccgcg gccttcggcc
961tttccgttcc gaacgtccac ggcgccctgg cccccctggc catcccctcg gcggcggcgg
1021cagctgcggc ggcaggtcgg atcgccatcc cgggcctggc gggggcagga aattctgtat
1081tgctggtcag caacctcaac ccagagagag tcacacccca aagcctcttt attcttttcg
1141gcgtctacgg tgacgtgcag cgcgtgaaga tcctgttcaa taagaaggag aacgcccTAG
1201TGCAGATGGC GGACGGCAAC CAGGCCCAGC TGGCCATGAG CCACCTGAAC GGGCACAAGC
1261TGCACGGGAA GCCCATCCGC ATCACGCTCT CGAAGCACCA GAACGTGCAG CTGCCCCGCG
1321AGGGCCAGGA GGACCAGGGC CTGACCAAGG ACTACGGCAA CTCACCCCTG CACCGCTTCA
1381AGAAGCCGGG CTCCAAGAAC TTCCAGAACA TATTCCCGCC CTCGGCCACG CTGCACCTCT
1441CCAACATCCC GCCCTCAGTC TCCGAGGAGG ATCTCAAGGT CCTGTTTTCC AGCAATGGGG
1501GCGTCGTCAA AGGATTCAAG TTCTTCCAGA AGGACCGCAA GATGGCACTG ATCCAGATGG
1561GCTCCGTGGA GGAGGCGGTC CAGGCCCTCA TTGACCTGCA CAACCACGAC CTCGGGGAGA
1621ACCACCACCT GCGGGTCTCC TTCTCCAAGT CCACCATCTA CCCAACTTTC TTGTACAAAG
1681TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1741GAACTAGTCC GTAACTTGAA AGTTTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA
1801CGAAAAACCT TCTTTATGTA CGACGAGACG CGTTAAGTCg acaatcaacc tctggattac
1861aaaatttgtg aaagatt

Download FASTA (ORF) (Full)